Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FNDC11 (fibronectin type III domain containing 11)

Identity

Alias_namesC20orf195
chromosome 20 open reading frame 195
Alias_symbol (synonym)MGC5356
Other alias
HGNC (Hugo) FNDC11
LocusID (NCBI) 79025
Atlas_Id 78539
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63554143 and ends at 63556707 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FNDC11   28764
Cards
Entrez_Gene (NCBI)FNDC11  79025  fibronectin type III domain containing 11
AliasesC20orf195
GeneCards (Weizmann)FNDC11
Ensembl hg19 (Hinxton)ENSG00000125531 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125531 [Gene_View]  chr20:63554143-63556707 [Contig_View]  FNDC11 [Vega]
ICGC DataPortalENSG00000125531
TCGA cBioPortalFNDC11
AceView (NCBI)FNDC11
Genatlas (Paris)FNDC11
WikiGenes79025
SOURCE (Princeton)FNDC11
Genetics Home Reference (NIH)FNDC11
Genomic and cartography
GoldenPath hg38 (UCSC)FNDC11  -     chr20:63554143-63556707 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FNDC11  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblFNDC11 - 20q13.33 [CytoView hg19]  FNDC11 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIFNDC11 [Mapview hg19]  FNDC11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125168 AW590437 BC000912 BG772889 BI828873
RefSeq transcript (Entrez)NM_001319152 NM_001319153 NM_024059
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FNDC11
Cluster EST : UnigeneHs.197755 [ NCBI ]
CGAP (NCI)Hs.197755
Alternative Splicing GalleryENSG00000125531
Gene ExpressionFNDC11 [ NCBI-GEO ]   FNDC11 [ EBI - ARRAY_EXPRESS ]   FNDC11 [ SEEK ]   FNDC11 [ MEM ]
Gene Expression Viewer (FireBrowse)FNDC11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79025
GTEX Portal (Tissue expression)FNDC11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVV2
Splice isoforms : SwissVarQ9BVV2
PhosPhoSitePlusQ9BVV2
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FNDC11
DMDM Disease mutations79025
Blocks (Seattle)FNDC11
SuperfamilyQ9BVV2
Human Protein AtlasENSG00000125531
Peptide AtlasQ9BVV2
HPRD14682
IPIIPI00031603   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVV2
IntAct (EBI)Q9BVV2
FunCoupENSG00000125531
BioGRIDFNDC11
STRING (EMBL)FNDC11
ZODIACFNDC11
Ontologies - Pathways
QuickGOQ9BVV2
Ontology : AmiGOprotein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular exosome  
NDEx NetworkFNDC11
Atlas of Cancer Signalling NetworkFNDC11
Wikipedia pathwaysFNDC11
Orthology - Evolution
OrthoDB79025
GeneTree (enSembl)ENSG00000125531
Phylogenetic Trees/Animal Genes : TreeFamFNDC11
HOVERGENQ9BVV2
HOGENOMQ9BVV2
Homologs : HomoloGeneFNDC11
Homology/Alignments : Family Browser (UCSC)FNDC11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFNDC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FNDC11
dbVarFNDC11
ClinVarFNDC11
1000_GenomesFNDC11 
Exome Variant ServerFNDC11
ExAC (Exome Aggregation Consortium)FNDC11 (select the gene name)
Genetic variants : HAPMAP79025
Genomic Variants (DGV)FNDC11 [DGVbeta]
DECIPHERFNDC11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFNDC11 
Mutations
ICGC Data PortalFNDC11 
TCGA Data PortalFNDC11 
Broad Tumor PortalFNDC11
OASIS PortalFNDC11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFNDC11
BioMutasearch FNDC11
DgiDB (Drug Gene Interaction Database)FNDC11
DoCM (Curated mutations)FNDC11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FNDC11 (select a term)
intoGenFNDC11
Cancer3DFNDC11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFNDC11
Genetic Testing Registry FNDC11
NextProtQ9BVV2 [Medical]
TSGene79025
GENETestsFNDC11
Target ValidationFNDC11
Huge Navigator FNDC11 [HugePedia]
snp3D : Map Gene to Disease79025
BioCentury BCIQFNDC11
ClinGenFNDC11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79025
Chemical/Pharm GKB GenePA142672215
Clinical trialFNDC11
Miscellaneous
canSAR (ICR)FNDC11 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFNDC11
EVEXFNDC11
GoPubMedFNDC11
iHOPFNDC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:49:43 CEST 2017

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