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FNDC3A (fibronectin type III domain containing 3A)

Identity

Alias_namesFNDC3
fibronectin type III domain containing 3
Alias_symbol (synonym)bA203I16.5
KIAA0970
Other aliasHUGO
bA203I16.1
HGNC (Hugo) FNDC3A
LocusID (NCBI) 22862
Atlas_Id 63550
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 49550048 and ends at 49783915 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCNB1 (5q13.2) / FNDC3A (13q14.2)FNDC3A (13q14.2) / ESD (13q14.2)FNDC3A (13q14.2) / MTHFD2 (2p13.1)
FNDC3A (13q14.2) / PHF11 (13q14.2)FNDC3A (13q14.2) / PSG3 (19q13.2)FNDC3A (13q14.2) / RB1 (13q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FNDC3A   20296
Cards
Entrez_Gene (NCBI)FNDC3A  22862  fibronectin type III domain containing 3A
AliasesFNDC3; HUGO; bA203I16.1; bA203I16.5
GeneCards (Weizmann)FNDC3A
Ensembl hg19 (Hinxton)ENSG00000102531 [Gene_View]  chr13:49550048-49783915 [Contig_View]  FNDC3A [Vega]
Ensembl hg38 (Hinxton)ENSG00000102531 [Gene_View]  chr13:49550048-49783915 [Contig_View]  FNDC3A [Vega]
ICGC DataPortalENSG00000102531
TCGA cBioPortalFNDC3A
AceView (NCBI)FNDC3A
Genatlas (Paris)FNDC3A
WikiGenes22862
SOURCE (Princeton)FNDC3A
Genetics Home Reference (NIH)FNDC3A
Genomic and cartography
GoldenPath hg19 (UCSC)FNDC3A  -     chr13:49550048-49783915 +  13q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FNDC3A  -     13q14.2   [Description]    (hg38-Dec_2013)
EnsemblFNDC3A - 13q14.2 [CytoView hg19]  FNDC3A - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBIFNDC3A [Mapview hg19]  FNDC3A [Mapview hg38]
OMIM615794   
Gene and transcription
Genbank (Entrez)AB023187 AJ749706 AJ749707 AK001140 AK056071
RefSeq transcript (Entrez)NM_001079673 NM_001278438 NM_014923
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)FNDC3A
Cluster EST : UnigeneHs.508010 [ NCBI ]
CGAP (NCI)Hs.508010
Alternative Splicing GalleryENSG00000102531
Gene ExpressionFNDC3A [ NCBI-GEO ]   FNDC3A [ EBI - ARRAY_EXPRESS ]   FNDC3A [ SEEK ]   FNDC3A [ MEM ]
Gene Expression Viewer (FireBrowse)FNDC3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22862
GTEX Portal (Tissue expression)FNDC3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2H6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2H6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2H6
Splice isoforms : SwissVarQ9Y2H6
PhosPhoSitePlusQ9Y2H6
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)FNDC3A
DMDM Disease mutations22862
Blocks (Seattle)FNDC3A
PDB (SRS)1WK0    1X3D    1X4X    1X5X    2CRM    2CRZ   
PDB (PDBSum)1WK0    1X3D    1X4X    1X5X    2CRM    2CRZ   
PDB (IMB)1WK0    1X3D    1X4X    1X5X    2CRM    2CRZ   
PDB (RSDB)1WK0    1X3D    1X4X    1X5X    2CRM    2CRZ   
Structural Biology KnowledgeBase1WK0    1X3D    1X4X    1X5X    2CRM    2CRZ   
SCOP (Structural Classification of Proteins)1WK0    1X3D    1X4X    1X5X    2CRM    2CRZ   
CATH (Classification of proteins structures)1WK0    1X3D    1X4X    1X5X    2CRM    2CRZ   
SuperfamilyQ9Y2H6
Human Protein AtlasENSG00000102531
Peptide AtlasQ9Y2H6
HPRD13548
IPIIPI00549232   IPI00456630   IPI00945904   IPI00945165   IPI00945320   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2H6
IntAct (EBI)Q9Y2H6
FunCoupENSG00000102531
BioGRIDFNDC3A
STRING (EMBL)FNDC3A
ZODIACFNDC3A
Ontologies - Pathways
QuickGOQ9Y2H6
Ontology : AmiGOGolgi membrane  acrosomal vesicle  Golgi apparatus  cytosol  spermatid development  fertilization  vesicle membrane  membrane  integral component of membrane  single organismal cell-cell adhesion  poly(A) RNA binding  Sertoli cell development  
Ontology : EGO-EBIGolgi membrane  acrosomal vesicle  Golgi apparatus  cytosol  spermatid development  fertilization  vesicle membrane  membrane  integral component of membrane  single organismal cell-cell adhesion  poly(A) RNA binding  Sertoli cell development  
NDEx NetworkFNDC3A
Atlas of Cancer Signalling NetworkFNDC3A
Wikipedia pathwaysFNDC3A
Orthology - Evolution
OrthoDB22862
GeneTree (enSembl)ENSG00000102531
Phylogenetic Trees/Animal Genes : TreeFamFNDC3A
HOVERGENQ9Y2H6
HOGENOMQ9Y2H6
Homologs : HomoloGeneFNDC3A
Homology/Alignments : Family Browser (UCSC)FNDC3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFNDC3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FNDC3A
dbVarFNDC3A
ClinVarFNDC3A
1000_GenomesFNDC3A 
Exome Variant ServerFNDC3A
ExAC (Exome Aggregation Consortium)FNDC3A (select the gene name)
Genetic variants : HAPMAP22862
Genomic Variants (DGV)FNDC3A [DGVbeta]
DECIPHER (Syndromes)13:49550048-49783915  ENSG00000102531
CONAN: Copy Number AnalysisFNDC3A 
Mutations
ICGC Data PortalFNDC3A 
TCGA Data PortalFNDC3A 
Broad Tumor PortalFNDC3A
OASIS PortalFNDC3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFNDC3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFNDC3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FNDC3A
DgiDB (Drug Gene Interaction Database)FNDC3A
DoCM (Curated mutations)FNDC3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FNDC3A (select a term)
intoGenFNDC3A
Cancer3DFNDC3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615794   
Orphanet
MedgenFNDC3A
Genetic Testing Registry FNDC3A
NextProtQ9Y2H6 [Medical]
TSGene22862
GENETestsFNDC3A
Huge Navigator FNDC3A [HugePedia]
snp3D : Map Gene to Disease22862
BioCentury BCIQFNDC3A
ClinGenFNDC3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22862
Chemical/Pharm GKB GenePA128394588
Clinical trialFNDC3A
Miscellaneous
canSAR (ICR)FNDC3A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFNDC3A
EVEXFNDC3A
GoPubMedFNDC3A
iHOPFNDC3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:16 CET 2017

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