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FNDC4 (fibronectin type III domain containing 4)

Identity

Alias_symbol (synonym)FLJ22362
FRCP1
Other alias
HGNC (Hugo) FNDC4
LocusID (NCBI) 64838
Atlas_Id 63551
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 27491883 and ends at 27495259 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FNDC4   20239
Cards
Entrez_Gene (NCBI)FNDC4  64838  fibronectin type III domain containing 4
AliasesFRCP1
GeneCards (Weizmann)FNDC4
Ensembl hg19 (Hinxton)ENSG00000115226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115226 [Gene_View]  chr2:27491883-27495259 [Contig_View]  FNDC4 [Vega]
ICGC DataPortalENSG00000115226
TCGA cBioPortalFNDC4
AceView (NCBI)FNDC4
Genatlas (Paris)FNDC4
WikiGenes64838
SOURCE (Princeton)FNDC4
Genetics Home Reference (NIH)FNDC4
Genomic and cartography
GoldenPath hg38 (UCSC)FNDC4  -     chr2:27491883-27495259 -  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FNDC4  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblFNDC4 - 2p23.3 [CytoView hg19]  FNDC4 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIFNDC4 [Mapview hg19]  FNDC4 [Mapview hg38]
OMIM611905   
Gene and transcription
Genbank (Entrez)AK026015 AY358136 BC024175 BC032725 DB452792
RefSeq transcript (Entrez)NM_022823
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FNDC4
Cluster EST : UnigeneHs.732184 [ NCBI ]
CGAP (NCI)Hs.732184
Alternative Splicing GalleryENSG00000115226
Gene ExpressionFNDC4 [ NCBI-GEO ]   FNDC4 [ EBI - ARRAY_EXPRESS ]   FNDC4 [ SEEK ]   FNDC4 [ MEM ]
Gene Expression Viewer (FireBrowse)FNDC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64838
GTEX Portal (Tissue expression)FNDC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6D8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6D8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6D8
Splice isoforms : SwissVarQ9H6D8
PhosPhoSitePlusQ9H6D8
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)FNDC4
DMDM Disease mutations64838
Blocks (Seattle)FNDC4
SuperfamilyQ9H6D8
Human Protein AtlasENSG00000115226
Peptide AtlasQ9H6D8
HPRD09965
IPIIPI00010189   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6D8
IntAct (EBI)Q9H6D8
FunCoupENSG00000115226
BioGRIDFNDC4
STRING (EMBL)FNDC4
ZODIACFNDC4
Ontologies - Pathways
QuickGOQ9H6D8
Ontology : AmiGOendoplasmic reticulum  plasma membrane  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum  plasma membrane  integral component of membrane  
NDEx NetworkFNDC4
Atlas of Cancer Signalling NetworkFNDC4
Wikipedia pathwaysFNDC4
Orthology - Evolution
OrthoDB64838
GeneTree (enSembl)ENSG00000115226
Phylogenetic Trees/Animal Genes : TreeFamFNDC4
HOVERGENQ9H6D8
HOGENOMQ9H6D8
Homologs : HomoloGeneFNDC4
Homology/Alignments : Family Browser (UCSC)FNDC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFNDC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FNDC4
dbVarFNDC4
ClinVarFNDC4
1000_GenomesFNDC4 
Exome Variant ServerFNDC4
ExAC (Exome Aggregation Consortium)FNDC4 (select the gene name)
Genetic variants : HAPMAP64838
Genomic Variants (DGV)FNDC4 [DGVbeta]
DECIPHERFNDC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFNDC4 
Mutations
ICGC Data PortalFNDC4 
TCGA Data PortalFNDC4 
Broad Tumor PortalFNDC4
OASIS PortalFNDC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFNDC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFNDC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FNDC4
DgiDB (Drug Gene Interaction Database)FNDC4
DoCM (Curated mutations)FNDC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FNDC4 (select a term)
intoGenFNDC4
Cancer3DFNDC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611905   
Orphanet
MedgenFNDC4
Genetic Testing Registry FNDC4
NextProtQ9H6D8 [Medical]
TSGene64838
GENETestsFNDC4
Target ValidationFNDC4
Huge Navigator FNDC4 [HugePedia]
snp3D : Map Gene to Disease64838
BioCentury BCIQFNDC4
ClinGenFNDC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64838
Chemical/Pharm GKB GenePA134883376
Clinical trialFNDC4
Miscellaneous
canSAR (ICR)FNDC4 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFNDC4
EVEXFNDC4
GoPubMedFNDC4
iHOPFNDC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:49 CEST 2017

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