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FNDC7 (fibronectin type III domain containing 7)

Identity

Alias_symbol (synonym)FLJ35838
Other alias-
HGNC (Hugo) FNDC7
LocusID (NCBI) 163479
Atlas_Id 63553
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108712934 and ends at 108742745 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FNDC7   26668
Cards
Entrez_Gene (NCBI)FNDC7  163479  fibronectin type III domain containing 7
Aliases
GeneCards (Weizmann)FNDC7
Ensembl hg19 (Hinxton)ENSG00000143107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143107 [Gene_View]  chr1:108712934-108742745 [Contig_View]  FNDC7 [Vega]
ICGC DataPortalENSG00000143107
TCGA cBioPortalFNDC7
AceView (NCBI)FNDC7
Genatlas (Paris)FNDC7
WikiGenes163479
SOURCE (Princeton)FNDC7
Genetics Home Reference (NIH)FNDC7
Genomic and cartography
GoldenPath hg38 (UCSC)FNDC7  -     chr1:108712934-108742745 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FNDC7  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblFNDC7 - 1p13.3 [CytoView hg19]  FNDC7 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIFNDC7 [Mapview hg19]  FNDC7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093157 BC057762 BC130421 BC144218
RefSeq transcript (Entrez)NM_001144937 NM_173532
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FNDC7
Cluster EST : UnigeneHs.258253 [ NCBI ]
CGAP (NCI)Hs.258253
Alternative Splicing GalleryENSG00000143107
Gene ExpressionFNDC7 [ NCBI-GEO ]   FNDC7 [ EBI - ARRAY_EXPRESS ]   FNDC7 [ SEEK ]   FNDC7 [ MEM ]
Gene Expression Viewer (FireBrowse)FNDC7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163479
GTEX Portal (Tissue expression)FNDC7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTL7
Splice isoforms : SwissVarQ5VTL7
PhosPhoSitePlusQ5VTL7
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)FNDC7
DMDM Disease mutations163479
Blocks (Seattle)FNDC7
SuperfamilyQ5VTL7
Human Protein AtlasENSG00000143107
Peptide AtlasQ5VTL7
HPRD08195
IPIIPI00183903   IPI00743208   IPI01008718   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTL7
IntAct (EBI)Q5VTL7
FunCoupENSG00000143107
BioGRIDFNDC7
STRING (EMBL)FNDC7
ZODIACFNDC7
Ontologies - Pathways
QuickGOQ5VTL7
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkFNDC7
Atlas of Cancer Signalling NetworkFNDC7
Wikipedia pathwaysFNDC7
Orthology - Evolution
OrthoDB163479
GeneTree (enSembl)ENSG00000143107
Phylogenetic Trees/Animal Genes : TreeFamFNDC7
HOVERGENQ5VTL7
HOGENOMQ5VTL7
Homologs : HomoloGeneFNDC7
Homology/Alignments : Family Browser (UCSC)FNDC7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFNDC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FNDC7
dbVarFNDC7
ClinVarFNDC7
1000_GenomesFNDC7 
Exome Variant ServerFNDC7
ExAC (Exome Aggregation Consortium)FNDC7 (select the gene name)
Genetic variants : HAPMAP163479
Genomic Variants (DGV)FNDC7 [DGVbeta]
DECIPHERFNDC7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFNDC7 
Mutations
ICGC Data PortalFNDC7 
TCGA Data PortalFNDC7 
Broad Tumor PortalFNDC7
OASIS PortalFNDC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFNDC7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFNDC7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FNDC7
DgiDB (Drug Gene Interaction Database)FNDC7
DoCM (Curated mutations)FNDC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FNDC7 (select a term)
intoGenFNDC7
Cancer3DFNDC7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFNDC7
Genetic Testing Registry FNDC7
NextProtQ5VTL7 [Medical]
TSGene163479
GENETestsFNDC7
Target ValidationFNDC7
Huge Navigator FNDC7 [HugePedia]
snp3D : Map Gene to Disease163479
BioCentury BCIQFNDC7
ClinGenFNDC7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163479
Chemical/Pharm GKB GenePA142671756
Clinical trialFNDC7
Miscellaneous
canSAR (ICR)FNDC7 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFNDC7
EVEXFNDC7
GoPubMedFNDC7
iHOPFNDC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:49:44 CEST 2017

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