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FNDC8 (fibronectin type III domain containing 8)

Identity

Alias_symbol (synonym)DKFZp434H2215
Other alias-
HGNC (Hugo) FNDC8
LocusID (NCBI) 54752
Atlas_Id 63554
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35121612 and ends at 35130732 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NLE1 (17q12) / FNDC8 (17q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FNDC8   25286
Cards
Entrez_Gene (NCBI)FNDC8  54752  fibronectin type III domain containing 8
Aliases
GeneCards (Weizmann)FNDC8
Ensembl hg19 (Hinxton)ENSG00000073598 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000073598 [Gene_View]  chr17:35121612-35130732 [Contig_View]  FNDC8 [Vega]
ICGC DataPortalENSG00000073598
TCGA cBioPortalFNDC8
AceView (NCBI)FNDC8
Genatlas (Paris)FNDC8
WikiGenes54752
SOURCE (Princeton)FNDC8
Genetics Home Reference (NIH)FNDC8
Genomic and cartography
GoldenPath hg38 (UCSC)FNDC8  -     chr17:35121612-35130732 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FNDC8  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblFNDC8 - 17q12 [CytoView hg19]  FNDC8 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIFNDC8 [Mapview hg19]  FNDC8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK225743 AK313775 AL133054 BC024002 BI829497
RefSeq transcript (Entrez)NM_017559
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FNDC8
Cluster EST : UnigeneHs.120369 [ NCBI ]
CGAP (NCI)Hs.120369
Alternative Splicing GalleryENSG00000073598
Gene ExpressionFNDC8 [ NCBI-GEO ]   FNDC8 [ EBI - ARRAY_EXPRESS ]   FNDC8 [ SEEK ]   FNDC8 [ MEM ]
Gene Expression Viewer (FireBrowse)FNDC8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54752
GTEX Portal (Tissue expression)FNDC8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC99
Splice isoforms : SwissVarQ8TC99
PhosPhoSitePlusQ8TC99
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)FNDC8
DMDM Disease mutations54752
Blocks (Seattle)FNDC8
SuperfamilyQ8TC99
Human Protein AtlasENSG00000073598
Peptide AtlasQ8TC99
HPRD13191
IPIIPI00290958   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC99
IntAct (EBI)Q8TC99
FunCoupENSG00000073598
BioGRIDFNDC8
STRING (EMBL)FNDC8
ZODIACFNDC8
Ontologies - Pathways
QuickGOQ8TC99
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFNDC8
Atlas of Cancer Signalling NetworkFNDC8
Wikipedia pathwaysFNDC8
Orthology - Evolution
OrthoDB54752
GeneTree (enSembl)ENSG00000073598
Phylogenetic Trees/Animal Genes : TreeFamFNDC8
HOVERGENQ8TC99
HOGENOMQ8TC99
Homologs : HomoloGeneFNDC8
Homology/Alignments : Family Browser (UCSC)FNDC8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFNDC8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FNDC8
dbVarFNDC8
ClinVarFNDC8
1000_GenomesFNDC8 
Exome Variant ServerFNDC8
ExAC (Exome Aggregation Consortium)FNDC8 (select the gene name)
Genetic variants : HAPMAP54752
Genomic Variants (DGV)FNDC8 [DGVbeta]
DECIPHERFNDC8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFNDC8 
Mutations
ICGC Data PortalFNDC8 
TCGA Data PortalFNDC8 
Broad Tumor PortalFNDC8
OASIS PortalFNDC8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFNDC8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFNDC8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FNDC8
DgiDB (Drug Gene Interaction Database)FNDC8
DoCM (Curated mutations)FNDC8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FNDC8 (select a term)
intoGenFNDC8
Cancer3DFNDC8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFNDC8
Genetic Testing Registry FNDC8
NextProtQ8TC99 [Medical]
TSGene54752
GENETestsFNDC8
Target ValidationFNDC8
Huge Navigator FNDC8 [HugePedia]
snp3D : Map Gene to Disease54752
BioCentury BCIQFNDC8
ClinGenFNDC8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54752
Chemical/Pharm GKB GenePA142671757
Clinical trialFNDC8
Miscellaneous
canSAR (ICR)FNDC8 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFNDC8
EVEXFNDC8
GoPubMedFNDC8
iHOPFNDC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:49 CEST 2017

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