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FNDC9 (fibronectin type III domain containing 9)

Identity

Alias_namesC5orf40
chromosome 5 open reading frame 40
Alias_symbol (synonym)MGC27121
Other alias
HGNC (Hugo) FNDC9
LocusID (NCBI) 408263
Atlas_Id 63555
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 156768607 and ends at 156772729 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FNDC9   33547
Cards
Entrez_Gene (NCBI)FNDC9  408263  fibronectin type III domain containing 9
AliasesC5orf40
GeneCards (Weizmann)FNDC9
Ensembl hg19 (Hinxton)ENSG00000172568 [Gene_View]  chr5:156768607-156772729 [Contig_View]  FNDC9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172568 [Gene_View]  chr5:156768607-156772729 [Contig_View]  FNDC9 [Vega]
ICGC DataPortalENSG00000172568
TCGA cBioPortalFNDC9
AceView (NCBI)FNDC9
Genatlas (Paris)FNDC9
WikiGenes408263
SOURCE (Princeton)FNDC9
Genetics Home Reference (NIH)FNDC9
Genomic and cartography
GoldenPath hg19 (UCSC)FNDC9  -     chr5:156768607-156772729 -  5q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FNDC9  -     5q33.3   [Description]    (hg38-Dec_2013)
EnsemblFNDC9 - 5q33.3 [CytoView hg19]  FNDC9 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIFNDC9 [Mapview hg19]  FNDC9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK289701 BC022570 DA173480 DB567325 HQ448341
RefSeq transcript (Entrez)NM_001001343
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)FNDC9
Cluster EST : UnigeneHs.437066 [ NCBI ]
CGAP (NCI)Hs.437066
Alternative Splicing GalleryENSG00000172568
Gene ExpressionFNDC9 [ NCBI-GEO ]   FNDC9 [ EBI - ARRAY_EXPRESS ]   FNDC9 [ SEEK ]   FNDC9 [ MEM ]
Gene Expression Viewer (FireBrowse)FNDC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)408263
GTEX Portal (Tissue expression)FNDC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBE3
Splice isoforms : SwissVarQ8TBE3
PhosPhoSitePlusQ8TBE3
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FNDC9
DMDM Disease mutations408263
Blocks (Seattle)FNDC9
SuperfamilyQ8TBE3
Human Protein AtlasENSG00000172568
Peptide AtlasQ8TBE3
HPRD17524
IPIIPI00290744   IPI00985380   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBE3
IntAct (EBI)Q8TBE3
FunCoupENSG00000172568
BioGRIDFNDC9
STRING (EMBL)FNDC9
ZODIACFNDC9
Ontologies - Pathways
QuickGOQ8TBE3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkFNDC9
Atlas of Cancer Signalling NetworkFNDC9
Wikipedia pathwaysFNDC9
Orthology - Evolution
OrthoDB408263
GeneTree (enSembl)ENSG00000172568
Phylogenetic Trees/Animal Genes : TreeFamFNDC9
HOVERGENQ8TBE3
HOGENOMQ8TBE3
Homologs : HomoloGeneFNDC9
Homology/Alignments : Family Browser (UCSC)FNDC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFNDC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FNDC9
dbVarFNDC9
ClinVarFNDC9
1000_GenomesFNDC9 
Exome Variant ServerFNDC9
ExAC (Exome Aggregation Consortium)FNDC9 (select the gene name)
Genetic variants : HAPMAP408263
Genomic Variants (DGV)FNDC9 [DGVbeta]
DECIPHER (Syndromes)5:156768607-156772729  ENSG00000172568
CONAN: Copy Number AnalysisFNDC9 
Mutations
ICGC Data PortalFNDC9 
TCGA Data PortalFNDC9 
Broad Tumor PortalFNDC9
OASIS PortalFNDC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFNDC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFNDC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FNDC9
DgiDB (Drug Gene Interaction Database)FNDC9
DoCM (Curated mutations)FNDC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FNDC9 (select a term)
intoGenFNDC9
Cancer3DFNDC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFNDC9
Genetic Testing Registry FNDC9
NextProtQ8TBE3 [Medical]
TSGene408263
GENETestsFNDC9
Huge Navigator FNDC9 [HugePedia]
snp3D : Map Gene to Disease408263
BioCentury BCIQFNDC9
ClinGenFNDC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD408263
Chemical/Pharm GKB GenePA162380178
Clinical trialFNDC9
Miscellaneous
canSAR (ICR)FNDC9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFNDC9
EVEXFNDC9
GoPubMedFNDC9
iHOPFNDC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:17 CET 2017

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