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FOCAD-AS1 (FOCAD antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) FOCAD-AS1
LocusID (NCBI) 101929548
Atlas_Id 63557
Location 9p21.3  [Link to chromosome band 9p21]
Location_base_pair Starts at 20683302 and ends at 20684750 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOCAD-AS1   49789
Cards
Entrez_Gene (NCBI)FOCAD-AS1  101929548  FOCAD antisense RNA 1
Aliases
GeneCards (Weizmann)FOCAD-AS1
Ensembl hg19 (Hinxton)ENSG00000227071 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227071 [Gene_View]  chr9:20683302-20684750 [Contig_View]  FOCAD-AS1 [Vega]
ICGC DataPortalENSG00000227071
TCGA cBioPortalFOCAD-AS1
AceView (NCBI)FOCAD-AS1
Genatlas (Paris)FOCAD-AS1
WikiGenes101929548
SOURCE (Princeton)FOCAD-AS1
Genetics Home Reference (NIH)FOCAD-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)FOCAD-AS1  -     chr9:20683302-20684750 -  9p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOCAD-AS1  -     9p21.3   [Description]    (hg19-Feb_2009)
EnsemblFOCAD-AS1 - 9p21.3 [CytoView hg19]  FOCAD-AS1 - 9p21.3 [CytoView hg38]
Mapping of homologs : NCBIFOCAD-AS1 [Mapview hg19]  FOCAD-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX115825
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOCAD-AS1
Cluster EST : UnigeneHs.668302 [ NCBI ]
CGAP (NCI)Hs.668302
Alternative Splicing GalleryENSG00000227071
Gene ExpressionFOCAD-AS1 [ NCBI-GEO ]   FOCAD-AS1 [ EBI - ARRAY_EXPRESS ]   FOCAD-AS1 [ SEEK ]   FOCAD-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOCAD-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929548
GTEX Portal (Tissue expression)FOCAD-AS1
Human Protein AtlasENSG00000227071-FOCAD-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FOCAD-AS1
DMDM Disease mutations101929548
Blocks (Seattle)FOCAD-AS1
Human Protein Atlas [tissue]ENSG00000227071-FOCAD-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000227071
BioGRIDFOCAD-AS1
STRING (EMBL)FOCAD-AS1
ZODIACFOCAD-AS1
Ontologies - Pathways
Huge Navigator FOCAD-AS1 [HugePedia]
snp3D : Map Gene to Disease101929548
BioCentury BCIQFOCAD-AS1
ClinGenFOCAD-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929548
Clinical trialFOCAD-AS1
Miscellaneous
canSAR (ICR)FOCAD-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOCAD-AS1
EVEXFOCAD-AS1
GoPubMedFOCAD-AS1
iHOPFOCAD-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:47 CET 2017

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