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FOPNL (FGFR1OP N-terminal like)

Identity

Alias_namesC16orf63
chromosome 16 open reading frame 63
Alias_symbol (synonym)DKFZp686N1651
FLJ31153
PHSECRG2
FOR20
Other alias
HGNC (Hugo) FOPNL
LocusID (NCBI) 123811
Atlas_Id 63559
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 15865719 and ends at 15888649 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FOPNL (16p13.11) / SLC12A2 (5q23.3)FOPNL (16p13.11) / SMA4 (5q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOPNL   26435
Cards
Entrez_Gene (NCBI)FOPNL  123811  FGFR1OP N-terminal like
AliasesC16orf63; FOR20; PHSECRG2
GeneCards (Weizmann)FOPNL
Ensembl hg19 (Hinxton)ENSG00000133393 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133393 [Gene_View]  chr16:15865719-15888649 [Contig_View]  FOPNL [Vega]
ICGC DataPortalENSG00000133393
TCGA cBioPortalFOPNL
AceView (NCBI)FOPNL
Genatlas (Paris)FOPNL
WikiGenes123811
SOURCE (Princeton)FOPNL
Genetics Home Reference (NIH)FOPNL
Genomic and cartography
GoldenPath hg38 (UCSC)FOPNL  -     chr16:15865719-15888649 -  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOPNL  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblFOPNL - 16p13.11 [CytoView hg19]  FOPNL - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBIFOPNL [Mapview hg19]  FOPNL [Mapview hg38]
OMIM617149   
Gene and transcription
Genbank (Entrez)AK055715 AK056798 AL832498 AY507846 BC022321
RefSeq transcript (Entrez)NM_001304497 NM_001304498 NM_001304499 NM_001304500 NM_001304502 NM_144600
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187607
Consensus coding sequences : CCDS (NCBI)FOPNL
Cluster EST : UnigeneHs.514179 [ NCBI ]
CGAP (NCI)Hs.514179
Alternative Splicing GalleryENSG00000133393
Gene ExpressionFOPNL [ NCBI-GEO ]   FOPNL [ EBI - ARRAY_EXPRESS ]   FOPNL [ SEEK ]   FOPNL [ MEM ]
Gene Expression Viewer (FireBrowse)FOPNL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123811
GTEX Portal (Tissue expression)FOPNL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NB1
Splice isoforms : SwissVarQ96NB1
PhosPhoSitePlusQ96NB1
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)FOP_dimerisation-dom_N    LisH   
Domain families : Pfam (Sanger)FOP_dimer (PF09398)   
Domain families : Pfam (NCBI)pfam09398   
Domain families : Smart (EMBL)LisH (SM00667)  
Conserved Domain (NCBI)FOPNL
DMDM Disease mutations123811
Blocks (Seattle)FOPNL
SuperfamilyQ96NB1
Human Protein AtlasENSG00000133393
Peptide AtlasQ96NB1
HPRD08096
IPIIPI00043563   IPI00643725   
Protein Interaction databases
DIP (DOE-UCLA)Q96NB1
IntAct (EBI)Q96NB1
FunCoupENSG00000133393
BioGRIDFOPNL
STRING (EMBL)FOPNL
ZODIACFOPNL
Ontologies - Pathways
QuickGOQ96NB1
Ontology : AmiGOnucleus  centrosome  centriole  motile cilium  centriolar satellite  microtubule anchoring  ciliary basal body  cilium assembly  
Ontology : EGO-EBInucleus  centrosome  centriole  motile cilium  centriolar satellite  microtubule anchoring  ciliary basal body  cilium assembly  
NDEx NetworkFOPNL
Atlas of Cancer Signalling NetworkFOPNL
Wikipedia pathwaysFOPNL
Orthology - Evolution
OrthoDB123811
GeneTree (enSembl)ENSG00000133393
Phylogenetic Trees/Animal Genes : TreeFamFOPNL
HOVERGENQ96NB1
HOGENOMQ96NB1
Homologs : HomoloGeneFOPNL
Homology/Alignments : Family Browser (UCSC)FOPNL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOPNL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOPNL
dbVarFOPNL
ClinVarFOPNL
1000_GenomesFOPNL 
Exome Variant ServerFOPNL
ExAC (Exome Aggregation Consortium)FOPNL (select the gene name)
Genetic variants : HAPMAP123811
Genomic Variants (DGV)FOPNL [DGVbeta]
DECIPHERFOPNL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOPNL 
Mutations
ICGC Data PortalFOPNL 
TCGA Data PortalFOPNL 
Broad Tumor PortalFOPNL
OASIS PortalFOPNL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOPNL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOPNL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOPNL
DgiDB (Drug Gene Interaction Database)FOPNL
DoCM (Curated mutations)FOPNL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOPNL (select a term)
intoGenFOPNL
Cancer3DFOPNL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617149   
Orphanet
MedgenFOPNL
Genetic Testing Registry FOPNL
NextProtQ96NB1 [Medical]
TSGene123811
GENETestsFOPNL
Target ValidationFOPNL
Huge Navigator FOPNL [HugePedia]
snp3D : Map Gene to Disease123811
BioCentury BCIQFOPNL
ClinGenFOPNL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123811
Chemical/Pharm GKB GenePA143485399
Clinical trialFOPNL
Miscellaneous
canSAR (ICR)FOPNL (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOPNL
EVEXFOPNL
GoPubMedFOPNL
iHOPFOPNL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:50 CEST 2017

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