Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXB1 (forkhead box B1)

Identity

Alias_symbol (synonym)HFKH-5
FKH5
Other alias
HGNC (Hugo) FOXB1
LocusID (NCBI) 27023
Atlas_Id 46890
Location 15q22.2  [Link to chromosome band 15q22]
Location_base_pair Starts at 60004222 and ends at 60005943 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXB1   3799
Cards
Entrez_Gene (NCBI)FOXB1  27023  forkhead box B1
AliasesFKH5; HFKH-5
GeneCards (Weizmann)FOXB1
Ensembl hg19 (Hinxton)ENSG00000171956 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171956 [Gene_View]  chr15:60004222-60005943 [Contig_View]  FOXB1 [Vega]
ICGC DataPortalENSG00000171956
TCGA cBioPortalFOXB1
AceView (NCBI)FOXB1
Genatlas (Paris)FOXB1
WikiGenes27023
SOURCE (Princeton)FOXB1
Genetics Home Reference (NIH)FOXB1
Genomic and cartography
GoldenPath hg38 (UCSC)FOXB1  -     chr15:60004222-60005943 +  15q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXB1  -     15q22.2   [Description]    (hg19-Feb_2009)
EnsemblFOXB1 - 15q22.2 [CytoView hg19]  FOXB1 - 15q22.2 [CytoView hg38]
Mapping of homologs : NCBIFOXB1 [Mapview hg19]  FOXB1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF071554 AK290944 AK314075 BC113710 DA685771
RefSeq transcript (Entrez)NM_012182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXB1
Cluster EST : UnigeneHs.734475 [ NCBI ]
CGAP (NCI)Hs.734475
Alternative Splicing GalleryENSG00000171956
Gene ExpressionFOXB1 [ NCBI-GEO ]   FOXB1 [ EBI - ARRAY_EXPRESS ]   FOXB1 [ SEEK ]   FOXB1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27023
GTEX Portal (Tissue expression)FOXB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99853   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99853  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99853
Splice isoforms : SwissVarQ99853
PhosPhoSitePlusQ99853
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXB1
DMDM Disease mutations27023
Blocks (Seattle)FOXB1
SuperfamilyQ99853
Human Protein AtlasENSG00000171956
Peptide AtlasQ99853
HPRD07017
IPIIPI00018495   
Protein Interaction databases
DIP (DOE-UCLA)Q99853
IntAct (EBI)Q99853
FunCoupENSG00000171956
BioGRIDFOXB1
STRING (EMBL)FOXB1
ZODIACFOXB1
Ontologies - Pathways
QuickGOQ99853
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  urogenital system development  somitogenesis  protein binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  axon target recognition  lactation  visual learning  spinal cord development  mammillary body development  thalamus development  hypothalamus cell migration  telencephalon cell migration  midbrain development  floor plate development  negative regulation of neuron apoptotic process  sequence-specific DNA binding  sequence-specific DNA binding  epithelial cell differentiation involved in mammary gland alveolus development  mammillothalamic axonal tract development  mammary gland lobule development  inferior colliculus development  cell migration in diencephalon  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  urogenital system development  somitogenesis  protein binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  axon target recognition  lactation  visual learning  spinal cord development  mammillary body development  thalamus development  hypothalamus cell migration  telencephalon cell migration  midbrain development  floor plate development  negative regulation of neuron apoptotic process  sequence-specific DNA binding  sequence-specific DNA binding  epithelial cell differentiation involved in mammary gland alveolus development  mammillothalamic axonal tract development  mammary gland lobule development  inferior colliculus development  cell migration in diencephalon  
NDEx NetworkFOXB1
Atlas of Cancer Signalling NetworkFOXB1
Wikipedia pathwaysFOXB1
Orthology - Evolution
OrthoDB27023
GeneTree (enSembl)ENSG00000171956
Phylogenetic Trees/Animal Genes : TreeFamFOXB1
HOVERGENQ99853
HOGENOMQ99853
Homologs : HomoloGeneFOXB1
Homology/Alignments : Family Browser (UCSC)FOXB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXB1
dbVarFOXB1
ClinVarFOXB1
1000_GenomesFOXB1 
Exome Variant ServerFOXB1
ExAC (Exome Aggregation Consortium)FOXB1 (select the gene name)
Genetic variants : HAPMAP27023
Genomic Variants (DGV)FOXB1 [DGVbeta]
DECIPHERFOXB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXB1 
Mutations
ICGC Data PortalFOXB1 
TCGA Data PortalFOXB1 
Broad Tumor PortalFOXB1
OASIS PortalFOXB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXB1
DgiDB (Drug Gene Interaction Database)FOXB1
DoCM (Curated mutations)FOXB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXB1 (select a term)
intoGenFOXB1
Cancer3DFOXB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFOXB1
Genetic Testing Registry FOXB1
NextProtQ99853 [Medical]
TSGene27023
GENETestsFOXB1
Target ValidationFOXB1
Huge Navigator FOXB1 [HugePedia]
snp3D : Map Gene to Disease27023
BioCentury BCIQFOXB1
ClinGenFOXB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27023
Chemical/Pharm GKB GenePA28216
Clinical trialFOXB1
Miscellaneous
canSAR (ICR)FOXB1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXB1
EVEXFOXB1
GoPubMedFOXB1
iHOPFOXB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:08:47 CEST 2017

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