Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXB2 (forkhead box B2)

Identity

Alias_symbol (synonym)bA159H20.4
Other alias
HGNC (Hugo) FOXB2
LocusID (NCBI) 442425
Atlas_Id 47154
Location 9q21.2  [Link to chromosome band 9q21]
Location_base_pair Starts at 77019655 and ends at 77020953 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXB2   23315
Cards
Entrez_Gene (NCBI)FOXB2  442425  forkhead box B2
AliasesbA159H20.4
GeneCards (Weizmann)FOXB2
Ensembl hg19 (Hinxton)ENSG00000204612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204612 [Gene_View]  chr9:77019655-77020953 [Contig_View]  FOXB2 [Vega]
ICGC DataPortalENSG00000204612
TCGA cBioPortalFOXB2
AceView (NCBI)FOXB2
Genatlas (Paris)FOXB2
WikiGenes442425
SOURCE (Princeton)FOXB2
Genetics Home Reference (NIH)FOXB2
Genomic and cartography
GoldenPath hg38 (UCSC)FOXB2  -     chr9:77019655-77020953 +  9q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXB2  -     9q21.2   [Description]    (hg19-Feb_2009)
EnsemblFOXB2 - 9q21.2 [CytoView hg19]  FOXB2 - 9q21.2 [CytoView hg38]
Mapping of homologs : NCBIFOXB2 [Mapview hg19]  FOXB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001013735
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXB2
Cluster EST : UnigeneHs.553843 [ NCBI ]
CGAP (NCI)Hs.553843
Alternative Splicing GalleryENSG00000204612
Gene ExpressionFOXB2 [ NCBI-GEO ]   FOXB2 [ EBI - ARRAY_EXPRESS ]   FOXB2 [ SEEK ]   FOXB2 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)442425
GTEX Portal (Tissue expression)FOXB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYV0
Splice isoforms : SwissVarQ5VYV0
PhosPhoSitePlusQ5VYV0
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXB2
DMDM Disease mutations442425
Blocks (Seattle)FOXB2
SuperfamilyQ5VYV0
Human Protein AtlasENSG00000204612
Peptide AtlasQ5VYV0
HPRD18473
IPIIPI00455929   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYV0
IntAct (EBI)Q5VYV0
FunCoupENSG00000204612
BioGRIDFOXB2
STRING (EMBL)FOXB2
ZODIACFOXB2
Ontologies - Pathways
QuickGOQ5VYV0
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXB2
Atlas of Cancer Signalling NetworkFOXB2
Wikipedia pathwaysFOXB2
Orthology - Evolution
OrthoDB442425
GeneTree (enSembl)ENSG00000204612
Phylogenetic Trees/Animal Genes : TreeFamFOXB2
HOVERGENQ5VYV0
HOGENOMQ5VYV0
Homologs : HomoloGeneFOXB2
Homology/Alignments : Family Browser (UCSC)FOXB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXB2
dbVarFOXB2
ClinVarFOXB2
1000_GenomesFOXB2 
Exome Variant ServerFOXB2
ExAC (Exome Aggregation Consortium)FOXB2 (select the gene name)
Genetic variants : HAPMAP442425
Genomic Variants (DGV)FOXB2 [DGVbeta]
DECIPHERFOXB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXB2 
Mutations
ICGC Data PortalFOXB2 
TCGA Data PortalFOXB2 
Broad Tumor PortalFOXB2
OASIS PortalFOXB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXB2
DgiDB (Drug Gene Interaction Database)FOXB2
DoCM (Curated mutations)FOXB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXB2 (select a term)
intoGenFOXB2
Cancer3DFOXB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFOXB2
Genetic Testing Registry FOXB2
NextProtQ5VYV0 [Medical]
TSGene442425
GENETestsFOXB2
Target ValidationFOXB2
Huge Navigator FOXB2 [HugePedia]
snp3D : Map Gene to Disease442425
BioCentury BCIQFOXB2
ClinGenFOXB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442425
Chemical/Pharm GKB GenePA145148830
Clinical trialFOXB2
Miscellaneous
canSAR (ICR)FOXB2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXB2
EVEXFOXB2
GoPubMedFOXB2
iHOPFOXB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:08:48 CEST 2017

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