Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FOXC2-AS1 (FOXC2 antisense RNA 1)

Identity

Alias_symbol (synonym)ODRUL
Other alias
HGNC (Hugo) FOXC2-AS1
LocusID (NCBI) 103752587
Atlas_Id 63560
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 86565145 and ends at 86567761 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXC2-AS1   50665
Cards
Entrez_Gene (NCBI)FOXC2-AS1  103752587  FOXC2 antisense RNA 1
AliasesODRUL
GeneCards (Weizmann)FOXC2-AS1
Ensembl hg19 (Hinxton)ENSG00000260944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260944 [Gene_View]  chr16:86565145-86567761 [Contig_View]  FOXC2-AS1 [Vega]
ICGC DataPortalENSG00000260944
TCGA cBioPortalFOXC2-AS1
AceView (NCBI)FOXC2-AS1
Genatlas (Paris)FOXC2-AS1
WikiGenes103752587
SOURCE (Princeton)FOXC2-AS1
Genetics Home Reference (NIH)FOXC2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)FOXC2-AS1  -     chr16:86565145-86567761 -  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXC2-AS1  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblFOXC2-AS1 - 16q24.1 [CytoView hg19]  FOXC2-AS1 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBIFOXC2-AS1 [Mapview hg19]  FOXC2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW271272
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXC2-AS1
Cluster EST : UnigeneHs.609366 [ NCBI ]
CGAP (NCI)Hs.609366
Alternative Splicing GalleryENSG00000260944
Gene ExpressionFOXC2-AS1 [ NCBI-GEO ]   FOXC2-AS1 [ EBI - ARRAY_EXPRESS ]   FOXC2-AS1 [ SEEK ]   FOXC2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXC2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103752587
GTEX Portal (Tissue expression)FOXC2-AS1
Human Protein AtlasENSG00000260944-FOXC2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FOXC2-AS1
DMDM Disease mutations103752587
Blocks (Seattle)FOXC2-AS1
Human Protein Atlas [tissue]ENSG00000260944-FOXC2-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000260944
BioGRIDFOXC2-AS1
STRING (EMBL)FOXC2-AS1
ZODIACFOXC2-AS1
Ontologies - Pathways
Huge Navigator FOXC2-AS1 [HugePedia]
snp3D : Map Gene to Disease103752587
BioCentury BCIQFOXC2-AS1
ClinGenFOXC2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103752587
Clinical trialFOXC2-AS1
Miscellaneous
canSAR (ICR)FOXC2-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXC2-AS1
EVEXFOXC2-AS1
GoPubMedFOXC2-AS1
iHOPFOXC2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:48:14 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.