Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FOXCUT (FOXC1 upstream transcript)

Identity

Alias_namesLINC01379
long intergenic non-protein coding RNA 1379
Alias_symbol (synonym)TCONS_00011636
Other alias
HGNC (Hugo) FOXCUT
LocusID (NCBI) 101927703
Atlas_Id 55501
Location 6p25.3  [Link to chromosome band 6p25]
Location_base_pair Starts at 1605531 and ends at 1607356 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXCUT   50650
Cards
Entrez_Gene (NCBI)FOXCUT  101927703  FOXC1 upstream transcript
AliasesLINC01379; TCONS_00011636
GeneCards (Weizmann)FOXCUT
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:1605531-1607356 [Contig_View]  FOXCUT [Vega]
TCGA cBioPortalFOXCUT
AceView (NCBI)FOXCUT
Genatlas (Paris)FOXCUT
WikiGenes101927703
SOURCE (Princeton)FOXCUT
Genetics Home Reference (NIH)FOXCUT
Genomic and cartography
GoldenPath hg38 (UCSC)FOXCUT  -     chr6:1605531-1607356 +  6p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXCUT  -     6p25.3   [Description]    (hg19-Feb_2009)
EnsemblFOXCUT - 6p25.3 [CytoView hg19]  FOXCUT - 6p25.3 [CytoView hg38]
Mapping of homologs : NCBIFOXCUT [Mapview hg19]  FOXCUT [Mapview hg38]
OMIM615976   
Gene and transcription
Genbank (Entrez)AW002296
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXCUT
Cluster EST : UnigeneHs.607964 [ NCBI ]
CGAP (NCI)Hs.607964
Gene ExpressionFOXCUT [ NCBI-GEO ]   FOXCUT [ EBI - ARRAY_EXPRESS ]   FOXCUT [ SEEK ]   FOXCUT [ MEM ]
Gene Expression Viewer (FireBrowse)FOXCUT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927703
GTEX Portal (Tissue expression)FOXCUT
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FOXCUT
DMDM Disease mutations101927703
Blocks (Seattle)FOXCUT
Protein Interaction databases
BioGRIDFOXCUT
STRING (EMBL)FOXCUT
ZODIACFOXCUT
Ontologies - Pathways
Huge Navigator FOXCUT [HugePedia]
snp3D : Map Gene to Disease101927703
BioCentury BCIQFOXCUT
ClinGenFOXCUT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927703
Clinical trialFOXCUT
Miscellaneous
canSAR (ICR)FOXCUT (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXCUT
EVEXFOXCUT
GoPubMedFOXCUT
iHOPFOXCUT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:07:03 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.