Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXD1 (forkhead box D1)

Identity

Alias_namesFKHL8
Alias_symbol (synonym)FREAC4
Other aliasFREAC-4
HGNC (Hugo) FOXD1
LocusID (NCBI) 2297
Atlas_Id 40625
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 72742085 and ends at 72744352 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXD1   3802
Cards
Entrez_Gene (NCBI)FOXD1  2297  forkhead box D1
AliasesFKHL8; FREAC-4; FREAC4
GeneCards (Weizmann)FOXD1
Ensembl hg19 (Hinxton)ENSG00000251493 [Gene_View]  chr5:72742085-72744352 [Contig_View]  FOXD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000251493 [Gene_View]  chr5:72742085-72744352 [Contig_View]  FOXD1 [Vega]
ICGC DataPortalENSG00000251493
TCGA cBioPortalFOXD1
AceView (NCBI)FOXD1
Genatlas (Paris)FOXD1
WikiGenes2297
SOURCE (Princeton)FOXD1
Genetics Home Reference (NIH)FOXD1
Genomic and cartography
GoldenPath hg19 (UCSC)FOXD1  -     chr5:72742085-72744352 -  5q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FOXD1  -     5q13.2   [Description]    (hg38-Dec_2013)
EnsemblFOXD1 - 5q13.2 [CytoView hg19]  FOXD1 - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBIFOXD1 [Mapview hg19]  FOXD1 [Mapview hg38]
OMIM601091   
Gene and transcription
Genbank (Entrez)BC160026 U13222 U59832
RefSeq transcript (Entrez)NM_004472
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)FOXD1
Cluster EST : UnigeneHs.519385 [ NCBI ]
CGAP (NCI)Hs.519385
Alternative Splicing GalleryENSG00000251493
Gene ExpressionFOXD1 [ NCBI-GEO ]   FOXD1 [ EBI - ARRAY_EXPRESS ]   FOXD1 [ SEEK ]   FOXD1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2297
GTEX Portal (Tissue expression)FOXD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16676   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16676  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16676
Splice isoforms : SwissVarQ16676
PhosPhoSitePlusQ16676
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD1
DMDM Disease mutations2297
Blocks (Seattle)FOXD1
SuperfamilyQ16676
Human Protein AtlasENSG00000251493
Peptide AtlasQ16676
HPRD03055
IPIIPI00003449   
Protein Interaction databases
DIP (DOE-UCLA)Q16676
IntAct (EBI)Q16676
FunCoupENSG00000251493
BioGRIDFOXD1
STRING (EMBL)FOXD1
ZODIACFOXD1
Ontologies - Pathways
QuickGOQ16676
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription from RNA polymerase II promoter  axon guidance  DNA binding, bending  positive regulation of gene expression  positive regulation of BMP signaling pathway  luteinizing hormone secretion  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  dichotomous subdivision of terminal units involved in ureteric bud branching  nephrogenic mesenchyme development  metanephric nephron development  metanephric capsule development  metanephric capsule specification  positive regulation of kidney development  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription from RNA polymerase II promoter  axon guidance  DNA binding, bending  positive regulation of gene expression  positive regulation of BMP signaling pathway  luteinizing hormone secretion  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  dichotomous subdivision of terminal units involved in ureteric bud branching  nephrogenic mesenchyme development  metanephric nephron development  metanephric capsule development  metanephric capsule specification  positive regulation of kidney development  
NDEx NetworkFOXD1
Atlas of Cancer Signalling NetworkFOXD1
Wikipedia pathwaysFOXD1
Orthology - Evolution
OrthoDB2297
GeneTree (enSembl)ENSG00000251493
Phylogenetic Trees/Animal Genes : TreeFamFOXD1
HOVERGENQ16676
HOGENOMQ16676
Homologs : HomoloGeneFOXD1
Homology/Alignments : Family Browser (UCSC)FOXD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD1
dbVarFOXD1
ClinVarFOXD1
1000_GenomesFOXD1 
Exome Variant ServerFOXD1
ExAC (Exome Aggregation Consortium)FOXD1 (select the gene name)
Genetic variants : HAPMAP2297
Genomic Variants (DGV)FOXD1 [DGVbeta]
DECIPHER (Syndromes)5:72742085-72744352  ENSG00000251493
CONAN: Copy Number AnalysisFOXD1 
Mutations
ICGC Data PortalFOXD1 
TCGA Data PortalFOXD1 
Broad Tumor PortalFOXD1
OASIS PortalFOXD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD1
DgiDB (Drug Gene Interaction Database)FOXD1
DoCM (Curated mutations)FOXD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD1 (select a term)
intoGenFOXD1
Cancer3DFOXD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601091   
Orphanet
MedgenFOXD1
Genetic Testing Registry FOXD1
NextProtQ16676 [Medical]
TSGene2297
GENETestsFOXD1
Huge Navigator FOXD1 [HugePedia]
snp3D : Map Gene to Disease2297
BioCentury BCIQFOXD1
ClinGenFOXD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2297
Chemical/Pharm GKB GenePA28219
Clinical trialFOXD1
Miscellaneous
canSAR (ICR)FOXD1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXD1
EVEXFOXD1
GoPubMedFOXD1
iHOPFOXD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:06:27 CET 2017

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