Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXD2 (forkhead box D2)

Identity

Alias_namesFKHL17
Alias_symbol (synonym)FREAC9
Other aliasFREAC-9
HGNC (Hugo) FOXD2
LocusID (NCBI) 2306
Atlas_Id 40626
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 47436017 and ends at 47440691 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXD2   3803
Cards
Entrez_Gene (NCBI)FOXD2  2306  forkhead box D2
AliasesFKHL17; FREAC-9; FREAC9
GeneCards (Weizmann)FOXD2
Ensembl hg19 (Hinxton)ENSG00000186564 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186564 [Gene_View]  chr1:47436017-47440691 [Contig_View]  FOXD2 [Vega]
ICGC DataPortalENSG00000186564
TCGA cBioPortalFOXD2
AceView (NCBI)FOXD2
Genatlas (Paris)FOXD2
WikiGenes2306
SOURCE (Princeton)FOXD2
Genetics Home Reference (NIH)FOXD2
Genomic and cartography
GoldenPath hg38 (UCSC)FOXD2  -     chr1:47436017-47440691 +  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXD2  -     1p33   [Description]    (hg19-Feb_2009)
EnsemblFOXD2 - 1p33 [CytoView hg19]  FOXD2 - 1p33 [CytoView hg38]
Mapping of homologs : NCBIFOXD2 [Mapview hg19]  FOXD2 [Mapview hg38]
OMIM602211   
Gene and transcription
Genbank (Entrez)AF042832 AL559120 BC169309 BC169310 BM665076
RefSeq transcript (Entrez)NM_004474
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXD2
Cluster EST : UnigeneHs.166188 [ NCBI ]
CGAP (NCI)Hs.166188
Alternative Splicing GalleryENSG00000186564
Gene ExpressionFOXD2 [ NCBI-GEO ]   FOXD2 [ EBI - ARRAY_EXPRESS ]   FOXD2 [ SEEK ]   FOXD2 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2306
GTEX Portal (Tissue expression)FOXD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60548   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60548  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60548
Splice isoforms : SwissVarO60548
PhosPhoSitePlusO60548
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD2
DMDM Disease mutations2306
Blocks (Seattle)FOXD2
SuperfamilyO60548
Human Protein AtlasENSG00000186564
Peptide AtlasO60548
HPRD03735
IPIIPI00030209   
Protein Interaction databases
DIP (DOE-UCLA)O60548
IntAct (EBI)O60548
FunCoupENSG00000186564
BioGRIDFOXD2
STRING (EMBL)FOXD2
ZODIACFOXD2
Ontologies - Pathways
QuickGOO60548
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXD2
Atlas of Cancer Signalling NetworkFOXD2
Wikipedia pathwaysFOXD2
Orthology - Evolution
OrthoDB2306
GeneTree (enSembl)ENSG00000186564
Phylogenetic Trees/Animal Genes : TreeFamFOXD2
HOVERGENO60548
HOGENOMO60548
Homologs : HomoloGeneFOXD2
Homology/Alignments : Family Browser (UCSC)FOXD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD2
dbVarFOXD2
ClinVarFOXD2
1000_GenomesFOXD2 
Exome Variant ServerFOXD2
ExAC (Exome Aggregation Consortium)FOXD2 (select the gene name)
Genetic variants : HAPMAP2306
Genomic Variants (DGV)FOXD2 [DGVbeta]
DECIPHERFOXD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXD2 
Mutations
ICGC Data PortalFOXD2 
TCGA Data PortalFOXD2 
Broad Tumor PortalFOXD2
OASIS PortalFOXD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD2
DgiDB (Drug Gene Interaction Database)FOXD2
DoCM (Curated mutations)FOXD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD2 (select a term)
intoGenFOXD2
Cancer3DFOXD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602211   
Orphanet
MedgenFOXD2
Genetic Testing Registry FOXD2
NextProtO60548 [Medical]
TSGene2306
GENETestsFOXD2
Target ValidationFOXD2
Huge Navigator FOXD2 [HugePedia]
snp3D : Map Gene to Disease2306
BioCentury BCIQFOXD2
ClinGenFOXD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2306
Chemical/Pharm GKB GenePA28220
Clinical trialFOXD2
Miscellaneous
canSAR (ICR)FOXD2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXD2
EVEXFOXD2
GoPubMedFOXD2
iHOPFOXD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:01:26 CEST 2017

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