Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXD2 (forkhead box D2)

Identity

Alias (NCBI)FKHL17
FREAC-9
FREAC9
HGNC (Hugo) FOXD2
HGNC Alias symbFREAC9
HGNC Previous nameFKHL17
LocusID (NCBI) 2306
Atlas_Id 40626
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 47438044 and ends at 47440691 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FOXD2   3803
Cards
Entrez_Gene (NCBI)FOXD2    forkhead box D2
AliasesFKHL17; FREAC-9; FREAC9
GeneCards (Weizmann)FOXD2
Ensembl hg19 (Hinxton)ENSG00000186564 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186564 [Gene_View]  ENSG00000186564 [Sequence]  chr1:47438044-47440691 [Contig_View]  FOXD2 [Vega]
ICGC DataPortalENSG00000186564
TCGA cBioPortalFOXD2
AceView (NCBI)FOXD2
Genatlas (Paris)FOXD2
SOURCE (Princeton)FOXD2
Genetics Home Reference (NIH)FOXD2
Genomic and cartography
GoldenPath hg38 (UCSC)FOXD2  -     chr1:47438044-47440691 +  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXD2  -     1p33   [Description]    (hg19-Feb_2009)
GoldenPathFOXD2 - 1p33 [CytoView hg19]  FOXD2 - 1p33 [CytoView hg38]
ImmunoBaseENSG00000186564
Genome Data Viewer NCBIFOXD2 [Mapview hg19]  
OMIM602211   
Gene and transcription
Genbank (Entrez)AF042832 AL559120 BM665076
RefSeq transcript (Entrez)NM_004474
Consensus coding sequences : CCDS (NCBI)FOXD2
Gene ExpressionFOXD2 [ NCBI-GEO ]   FOXD2 [ EBI - ARRAY_EXPRESS ]   FOXD2 [ SEEK ]   FOXD2 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD2 [ Firebrowse - Broad ]
GenevisibleExpression of FOXD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2306
GTEX Portal (Tissue expression)FOXD2
Human Protein AtlasENSG00000186564-FOXD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60548   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60548  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60548
PhosPhoSitePlusO60548
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD2
SuperfamilyO60548
AlphaFold pdb e-kbO60548   
Human Protein Atlas [tissue]ENSG00000186564-FOXD2 [tissue]
HPRD03735
Protein Interaction databases
DIP (DOE-UCLA)O60548
IntAct (EBI)O60548
BioGRIDFOXD2
STRING (EMBL)FOXD2
ZODIACFOXD2
Ontologies - Pathways
QuickGOO60548
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  cell differentiation  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  cell differentiation  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
NDEx NetworkFOXD2
Atlas of Cancer Signalling NetworkFOXD2
Wikipedia pathwaysFOXD2
Orthology - Evolution
OrthoDB2306
GeneTree (enSembl)ENSG00000186564
Phylogenetic Trees/Animal Genes : TreeFamFOXD2
Homologs : HomoloGeneFOXD2
Homology/Alignments : Family Browser (UCSC)FOXD2
Gene fusions - Rearrangements
Fusion : QuiverFOXD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD2
dbVarFOXD2
ClinVarFOXD2
MonarchFOXD2
1000_GenomesFOXD2 
Exome Variant ServerFOXD2
GNOMAD BrowserENSG00000186564
Varsome BrowserFOXD2
ACMGFOXD2 variants
VarityO60548
Genomic Variants (DGV)FOXD2 [DGVbeta]
DECIPHERFOXD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXD2 
Mutations
ICGC Data PortalFOXD2 
TCGA Data PortalFOXD2 
Broad Tumor PortalFOXD2
OASIS PortalFOXD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFOXD2
Mutations and Diseases : HGMDFOXD2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFOXD2
DgiDB (Drug Gene Interaction Database)FOXD2
DoCM (Curated mutations)FOXD2
CIViC (Clinical Interpretations of Variants in Cancer)FOXD2
Cancer3DFOXD2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602211   
Orphanet
DisGeNETFOXD2
MedgenFOXD2
Genetic Testing Registry FOXD2
NextProtO60548 [Medical]
GENETestsFOXD2
Target ValidationFOXD2
Huge Navigator FOXD2 [HugePedia]
ClinGenFOXD2
Clinical trials, drugs, therapy
MyCancerGenomeFOXD2
Protein Interactions : CTDFOXD2
Pharm GKB GenePA28220
PharosO60548
Clinical trialFOXD2
Miscellaneous
canSAR (ICR)FOXD2
HarmonizomeFOXD2
DataMed IndexFOXD2
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFOXD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:09:48 CEST 2021

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