Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXD3 (forkhead box D3)

Identity

Alias (NCBI)AIS1
Genesis
HFH2
VAMAS2
HGNC (Hugo) FOXD3
HGNC Alias symbGenesis
HFH2
LocusID (NCBI) 27022
Atlas_Id 47419
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 63322567 and ends at 63325128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)FOXD3   3804
Cards
Entrez_Gene (NCBI)FOXD3    forkhead box D3
AliasesAIS1; Genesis; HFH2; VAMAS2
GeneCards (Weizmann)FOXD3
Ensembl hg19 (Hinxton)ENSG00000187140 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187140 [Gene_View]  ENSG00000187140 [Sequence]  chr1:63322567-63325128 [Contig_View]  FOXD3 [Vega]
ICGC DataPortalENSG00000187140
TCGA cBioPortalFOXD3
AceView (NCBI)FOXD3
Genatlas (Paris)FOXD3
SOURCE (Princeton)FOXD3
Genetics Home Reference (NIH)FOXD3
Genomic and cartography
GoldenPath hg38 (UCSC)FOXD3  -     chr1:63322567-63325128 +  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXD3  -     1p31.3   [Description]    (hg19-Feb_2009)
GoldenPathFOXD3 - 1p31.3 [CytoView hg19]  FOXD3 - 1p31.3 [CytoView hg38]
ImmunoBaseENSG00000187140
genome Data Viewer NCBIFOXD3 [Mapview hg19]  
OMIM607836   611539   
Gene and transcription
Genbank (Entrez)AF086235 L12142
RefSeq transcript (Entrez)NM_012183
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXD3
Alternative Splicing GalleryENSG00000187140
Gene ExpressionFOXD3 [ NCBI-GEO ]   FOXD3 [ EBI - ARRAY_EXPRESS ]   FOXD3 [ SEEK ]   FOXD3 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD3 [ Firebrowse - Broad ]
GenevisibleExpression of FOXD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27022
GTEX Portal (Tissue expression)FOXD3
Human Protein AtlasENSG00000187140-FOXD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJU5
Splice isoforms : SwissVarQ9UJU5
PhosPhoSitePlusQ9UJU5
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD3
Blocks (Seattle)FOXD3
SuperfamilyQ9UJU5
Human Protein Atlas [tissue]ENSG00000187140-FOXD3 [tissue]
Peptide AtlasQ9UJU5
HPRD07018
IPIIPI00007164   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJU5
IntAct (EBI)Q9UJU5
BioGRIDFOXD3
STRING (EMBL)FOXD3
ZODIACFOXD3
Ontologies - Pathways
QuickGOQ9UJU5
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  negative regulation of transcription by RNA polymerase II  chromatin  chromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  in utero embryonic development  DNA-binding transcription factor activity  protein binding  nucleoplasm  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  cell differentiation  somatic stem cell population maintenance  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  negative regulation of transcription by RNA polymerase II  chromatin  chromatin  RNA polymerase II transcription regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  in utero embryonic development  DNA-binding transcription factor activity  protein binding  nucleoplasm  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  cell differentiation  somatic stem cell population maintenance  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
NDEx NetworkFOXD3
Atlas of Cancer Signalling NetworkFOXD3
Wikipedia pathwaysFOXD3
Orthology - Evolution
OrthoDB27022
GeneTree (enSembl)ENSG00000187140
Phylogenetic Trees/Animal Genes : TreeFamFOXD3
HOGENOMQ9UJU5
Homologs : HomoloGeneFOXD3
Homology/Alignments : Family Browser (UCSC)FOXD3
Gene fusions - Rearrangements
Fusion : QuiverFOXD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD3 [hg38]
dbVarFOXD3
ClinVarFOXD3
MonarchFOXD3
1000_GenomesFOXD3 
Exome Variant ServerFOXD3
GNOMAD BrowserENSG00000187140
Varsome BrowserFOXD3
Genomic Variants (DGV)FOXD3 [DGVbeta]
DECIPHERFOXD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXD3 
Mutations
ICGC Data PortalFOXD3 
TCGA Data PortalFOXD3 
Broad Tumor PortalFOXD3
OASIS PortalFOXD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFOXD3
Mutations and Diseases : HGMDFOXD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD3
DgiDB (Drug Gene Interaction Database)FOXD3
DoCM (Curated mutations)FOXD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD3 (select a term)
intoGenFOXD3
Cancer3DFOXD3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607836    611539   
Orphanet19560   
DisGeNETFOXD3
MedgenFOXD3
Genetic Testing Registry FOXD3
NextProtQ9UJU5 [Medical]
GENETestsFOXD3
Target ValidationFOXD3
Huge Navigator FOXD3 [HugePedia]
ClinGenFOXD3
Clinical trials, drugs, therapy
MyCancerGenomeFOXD3
Protein Interactions : CTD
Pharm GKB GenePA28221
PharosQ9UJU5
Clinical trialFOXD3
Miscellaneous
canSAR (ICR)FOXD3 (select the gene name)
HarmonizomeFOXD3
DataMed IndexFOXD3
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFOXD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:21:59 CET 2021

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