Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXD3 (forkhead box D3)

Identity

Alias_symbol (synonym)Genesis
HFH2
Other aliasAIS1
VAMAS2
HGNC (Hugo) FOXD3
LocusID (NCBI) 27022
Atlas_Id 47419
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 63323059 and ends at 63325126 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXD3   3804
Cards
Entrez_Gene (NCBI)FOXD3  27022  forkhead box D3
AliasesAIS1; Genesis; HFH2; VAMAS2
GeneCards (Weizmann)FOXD3
Ensembl hg19 (Hinxton)ENSG00000187140 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187140 [Gene_View]  chr1:63323059-63325126 [Contig_View]  FOXD3 [Vega]
ICGC DataPortalENSG00000187140
TCGA cBioPortalFOXD3
AceView (NCBI)FOXD3
Genatlas (Paris)FOXD3
WikiGenes27022
SOURCE (Princeton)FOXD3
Genetics Home Reference (NIH)FOXD3
Genomic and cartography
GoldenPath hg38 (UCSC)FOXD3  -     chr1:63323059-63325126 +  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXD3  -     1p31.3   [Description]    (hg19-Feb_2009)
EnsemblFOXD3 - 1p31.3 [CytoView hg19]  FOXD3 - 1p31.3 [CytoView hg38]
Mapping of homologs : NCBIFOXD3 [Mapview hg19]  FOXD3 [Mapview hg38]
OMIM607836   611539   
Gene and transcription
Genbank (Entrez)AF086235 BC172266 BC172572 L12142
RefSeq transcript (Entrez)NM_012183
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXD3
Cluster EST : UnigeneHs.546573 [ NCBI ]
CGAP (NCI)Hs.546573
Alternative Splicing GalleryENSG00000187140
Gene ExpressionFOXD3 [ NCBI-GEO ]   FOXD3 [ EBI - ARRAY_EXPRESS ]   FOXD3 [ SEEK ]   FOXD3 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27022
GTEX Portal (Tissue expression)FOXD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJU5
Splice isoforms : SwissVarQ9UJU5
PhosPhoSitePlusQ9UJU5
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD3
DMDM Disease mutations27022
Blocks (Seattle)FOXD3
SuperfamilyQ9UJU5
Human Protein AtlasENSG00000187140
Peptide AtlasQ9UJU5
HPRD07018
IPIIPI00007164   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJU5
IntAct (EBI)Q9UJU5
FunCoupENSG00000187140
BioGRIDFOXD3
STRING (EMBL)FOXD3
ZODIACFOXD3
Ontologies - Pathways
QuickGOQ9UJU5
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  negative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  in utero embryonic development  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  somatic stem cell population maintenance  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  negative regulation of transcription from RNA polymerase II promoter  nuclear chromatin  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  in utero embryonic development  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  somatic stem cell population maintenance  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkFOXD3
Atlas of Cancer Signalling NetworkFOXD3
Wikipedia pathwaysFOXD3
Orthology - Evolution
OrthoDB27022
GeneTree (enSembl)ENSG00000187140
Phylogenetic Trees/Animal Genes : TreeFamFOXD3
HOVERGENQ9UJU5
HOGENOMQ9UJU5
Homologs : HomoloGeneFOXD3
Homology/Alignments : Family Browser (UCSC)FOXD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD3
dbVarFOXD3
ClinVarFOXD3
1000_GenomesFOXD3 
Exome Variant ServerFOXD3
ExAC (Exome Aggregation Consortium)FOXD3 (select the gene name)
Genetic variants : HAPMAP27022
Genomic Variants (DGV)FOXD3 [DGVbeta]
DECIPHERFOXD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXD3 
Mutations
ICGC Data PortalFOXD3 
TCGA Data PortalFOXD3 
Broad Tumor PortalFOXD3
OASIS PortalFOXD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD3
DgiDB (Drug Gene Interaction Database)FOXD3
DoCM (Curated mutations)FOXD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD3 (select a term)
intoGenFOXD3
Cancer3DFOXD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607836    611539   
Orphanet19560   
MedgenFOXD3
Genetic Testing Registry FOXD3
NextProtQ9UJU5 [Medical]
TSGene27022
GENETestsFOXD3
Huge Navigator FOXD3 [HugePedia]
snp3D : Map Gene to Disease27022
BioCentury BCIQFOXD3
ClinGenFOXD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27022
Chemical/Pharm GKB GenePA28221
Clinical trialFOXD3
Miscellaneous
canSAR (ICR)FOXD3 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXD3
EVEXFOXD3
GoPubMedFOXD3
iHOPFOXD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:16:18 CEST 2017

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