Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXD4 (forkhead box D4)

Identity

Alias_namesFKHL9
Alias_symbol (synonym)FREAC5
FOXD4a
Other aliasFOXD4A
FREAC-5
HGNC (Hugo) FOXD4
LocusID (NCBI) 2298
Atlas_Id 47221
Location 9p24.3  [Link to chromosome band 9p24]
Location_base_pair Starts at 116231 and ends at 118417 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXD4   3805
LRG (Locus Reference Genomic)LRG_452
Cards
Entrez_Gene (NCBI)FOXD4  2298  forkhead box D4
AliasesFKHL9; FOXD4A; FREAC-5; FREAC5
GeneCards (Weizmann)FOXD4
Ensembl hg19 (Hinxton)ENSG00000170122 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170122 [Gene_View]  chr9:116231-118417 [Contig_View]  FOXD4 [Vega]
ICGC DataPortalENSG00000170122
TCGA cBioPortalFOXD4
AceView (NCBI)FOXD4
Genatlas (Paris)FOXD4
WikiGenes2298
SOURCE (Princeton)FOXD4
Genetics Home Reference (NIH)FOXD4
Genomic and cartography
GoldenPath hg38 (UCSC)FOXD4  -     chr9:116231-118417 -  9p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXD4  -     9p24.3   [Description]    (hg19-Feb_2009)
EnsemblFOXD4 - 9p24.3 [CytoView hg19]  FOXD4 - 9p24.3 [CytoView hg38]
Mapping of homologs : NCBIFOXD4 [Mapview hg19]  FOXD4 [Mapview hg38]
OMIM601092   
Gene and transcription
Genbank (Entrez)AF452724 AY344640 BC089432 BC103886 BC136570
RefSeq transcript (Entrez)NM_207305
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXD4
Cluster EST : UnigeneHs.584759 [ NCBI ]
CGAP (NCI)Hs.584759
Alternative Splicing GalleryENSG00000170122
Gene ExpressionFOXD4 [ NCBI-GEO ]   FOXD4 [ EBI - ARRAY_EXPRESS ]   FOXD4 [ SEEK ]   FOXD4 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2298
GTEX Portal (Tissue expression)FOXD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12950   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12950  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12950
Splice isoforms : SwissVarQ12950
PhosPhoSitePlusQ12950
Domaine pattern : Prosite (Expaxy)FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD4
DMDM Disease mutations2298
Blocks (Seattle)FOXD4
SuperfamilyQ12950
Human Protein AtlasENSG00000170122
Peptide AtlasQ12950
HPRD03056
IPIIPI00030339   
Protein Interaction databases
DIP (DOE-UCLA)Q12950
IntAct (EBI)Q12950
FunCoupENSG00000170122
BioGRIDFOXD4
STRING (EMBL)FOXD4
ZODIACFOXD4
Ontologies - Pathways
QuickGOQ12950
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  DNA binding, bending  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  DNA binding, bending  sequence-specific DNA binding  
NDEx NetworkFOXD4
Atlas of Cancer Signalling NetworkFOXD4
Wikipedia pathwaysFOXD4
Orthology - Evolution
OrthoDB2298
GeneTree (enSembl)ENSG00000170122
Phylogenetic Trees/Animal Genes : TreeFamFOXD4
HOVERGENQ12950
HOGENOMQ12950
Homologs : HomoloGeneFOXD4
Homology/Alignments : Family Browser (UCSC)FOXD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD4
dbVarFOXD4
ClinVarFOXD4
1000_GenomesFOXD4 
Exome Variant ServerFOXD4
ExAC (Exome Aggregation Consortium)FOXD4 (select the gene name)
Genetic variants : HAPMAP2298
Genomic Variants (DGV)FOXD4 [DGVbeta]
DECIPHERFOXD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXD4 
Mutations
ICGC Data PortalFOXD4 
TCGA Data PortalFOXD4 
Broad Tumor PortalFOXD4
OASIS PortalFOXD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD4
DgiDB (Drug Gene Interaction Database)FOXD4
DoCM (Curated mutations)FOXD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD4 (select a term)
intoGenFOXD4
Cancer3DFOXD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601092   
Orphanet
MedgenFOXD4
Genetic Testing Registry FOXD4
NextProtQ12950 [Medical]
TSGene2298
GENETestsFOXD4
Target ValidationFOXD4
Huge Navigator FOXD4 [HugePedia]
snp3D : Map Gene to Disease2298
BioCentury BCIQFOXD4
ClinGenFOXD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2298
Chemical/Pharm GKB GenePA28222
Clinical trialFOXD4
Miscellaneous
canSAR (ICR)FOXD4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXD4
EVEXFOXD4
GoPubMedFOXD4
iHOPFOXD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:15 CEST 2017

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