Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FOXD4L1 (forkhead box D4 like 1)

Identity

Alias_symbol (synonym)FOXD5
Other aliasbA395L14.1
HGNC (Hugo) FOXD4L1
LocusID (NCBI) 200350
Atlas_Id 40627
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 113499084 and ends at 113501150 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXD4L1   18521
Cards
Entrez_Gene (NCBI)FOXD4L1  200350  forkhead box D4 like 1
AliasesFOXD5; bA395L14.1
GeneCards (Weizmann)FOXD4L1
Ensembl hg19 (Hinxton)ENSG00000184492 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184492 [Gene_View]  ENSG00000184492 [Sequence]  chr2:113499084-113501150 [Contig_View]  FOXD4L1 [Vega]
ICGC DataPortalENSG00000184492
TCGA cBioPortalFOXD4L1
AceView (NCBI)FOXD4L1
Genatlas (Paris)FOXD4L1
WikiGenes200350
SOURCE (Princeton)FOXD4L1
Genetics Home Reference (NIH)FOXD4L1
Genomic and cartography
GoldenPath hg38 (UCSC)FOXD4L1  -     chr2:113499084-113501150 +  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXD4L1  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblFOXD4L1 - 2q14.1 [CytoView hg19]  FOXD4L1 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBIFOXD4L1 [Mapview hg19]  FOXD4L1 [Mapview hg38]
OMIM611084   
Gene and transcription
Genbank (Entrez)AF452723 AK122950 AK125398 AY344639 BC136428
RefSeq transcript (Entrez)NM_012184
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXD4L1
Cluster EST : UnigeneHs.591554 [ NCBI ]
CGAP (NCI)Hs.591554
Alternative Splicing GalleryENSG00000184492
Gene ExpressionFOXD4L1 [ NCBI-GEO ]   FOXD4L1 [ EBI - ARRAY_EXPRESS ]   FOXD4L1 [ SEEK ]   FOXD4L1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD4L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200350
GTEX Portal (Tissue expression)FOXD4L1
Human Protein AtlasENSG00000184492-FOXD4L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NU39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NU39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NU39
Splice isoforms : SwissVarQ9NU39
PhosPhoSitePlusQ9NU39
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD4L1
DMDM Disease mutations200350
Blocks (Seattle)FOXD4L1
SuperfamilyQ9NU39
Human Protein Atlas [tissue]ENSG00000184492-FOXD4L1 [tissue]
Peptide AtlasQ9NU39
HPRD17010
IPIIPI00018380   
Protein Interaction databases
DIP (DOE-UCLA)Q9NU39
IntAct (EBI)Q9NU39
FunCoupENSG00000184492
BioGRIDFOXD4L1
STRING (EMBL)FOXD4L1
ZODIACFOXD4L1
Ontologies - Pathways
QuickGOQ9NU39
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  cell differentiation  sequence-specific DNA binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  cell differentiation  sequence-specific DNA binding  
NDEx NetworkFOXD4L1
Atlas of Cancer Signalling NetworkFOXD4L1
Wikipedia pathwaysFOXD4L1
Orthology - Evolution
OrthoDB200350
GeneTree (enSembl)ENSG00000184492
Phylogenetic Trees/Animal Genes : TreeFamFOXD4L1
HOVERGENQ9NU39
HOGENOMQ9NU39
Homologs : HomoloGeneFOXD4L1
Homology/Alignments : Family Browser (UCSC)FOXD4L1
Gene fusions - Rearrangements
Fusion : QuiverFOXD4L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD4L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD4L1
dbVarFOXD4L1
ClinVarFOXD4L1
1000_GenomesFOXD4L1 
Exome Variant ServerFOXD4L1
ExAC (Exome Aggregation Consortium)ENSG00000184492
GNOMAD BrowserENSG00000184492
Varsome BrowserFOXD4L1
Genetic variants : HAPMAP200350
Genomic Variants (DGV)FOXD4L1 [DGVbeta]
DECIPHERFOXD4L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXD4L1 
Mutations
ICGC Data PortalFOXD4L1 
TCGA Data PortalFOXD4L1 
Broad Tumor PortalFOXD4L1
OASIS PortalFOXD4L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD4L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXD4L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD4L1
DgiDB (Drug Gene Interaction Database)FOXD4L1
DoCM (Curated mutations)FOXD4L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD4L1 (select a term)
intoGenFOXD4L1
Cancer3DFOXD4L1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611084   
Orphanet
DisGeNETFOXD4L1
MedgenFOXD4L1
Genetic Testing Registry FOXD4L1
NextProtQ9NU39 [Medical]
TSGene200350
GENETestsFOXD4L1
Target ValidationFOXD4L1
Huge Navigator FOXD4L1 [HugePedia]
snp3D : Map Gene to Disease200350
BioCentury BCIQFOXD4L1
ClinGenFOXD4L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200350
Chemical/Pharm GKB GenePA134928763
Clinical trialFOXD4L1
Miscellaneous
canSAR (ICR)FOXD4L1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXD4L1
EVEXFOXD4L1
GoPubMedFOXD4L1
iHOPFOXD4L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:07:04 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.