Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXD4L3 (forkhead box D4-like 3)

Identity

Alias_symbol (synonym)OTTHUMG00000019959
FOXD6
Other aliasFOXD4L2
HGNC (Hugo) FOXD4L3
LocusID (NCBI) 286380
Atlas_Id 47385
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 68302867 and ends at 68305084 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXD4L3   18523
Cards
Entrez_Gene (NCBI)FOXD4L3  286380  forkhead box D4-like 3
AliasesFOXD4L2; FOXD6
GeneCards (Weizmann)FOXD4L3
Ensembl hg19 (Hinxton)ENSG00000187559 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187559 [Gene_View]  chr9:68302867-68305084 [Contig_View]  FOXD4L3 [Vega]
ICGC DataPortalENSG00000187559
TCGA cBioPortalFOXD4L3
AceView (NCBI)FOXD4L3
Genatlas (Paris)FOXD4L3
WikiGenes286380
SOURCE (Princeton)FOXD4L3
Genetics Home Reference (NIH)FOXD4L3
Genomic and cartography
GoldenPath hg38 (UCSC)FOXD4L3  -     chr9:68302867-68305084 +  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXD4L3  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblFOXD4L3 - 9q21.11 [CytoView hg19]  FOXD4L3 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIFOXD4L3 [Mapview hg19]  FOXD4L3 [Mapview hg38]
OMIM611086   
Gene and transcription
Genbank (Entrez)AY344641 AY344642 BC172338 BC172341
RefSeq transcript (Entrez)NM_199135
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXD4L3
Cluster EST : UnigeneHs.449471 [ NCBI ]
CGAP (NCI)Hs.449471
Alternative Splicing GalleryENSG00000187559
Gene ExpressionFOXD4L3 [ NCBI-GEO ]   FOXD4L3 [ EBI - ARRAY_EXPRESS ]   FOXD4L3 [ SEEK ]   FOXD4L3 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD4L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286380
GTEX Portal (Tissue expression)FOXD4L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6VB84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6VB84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6VB84
Splice isoforms : SwissVarQ6VB84
PhosPhoSitePlusQ6VB84
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD4L3
DMDM Disease mutations286380
Blocks (Seattle)FOXD4L3
SuperfamilyQ6VB84
Human Protein AtlasENSG00000187559
Peptide AtlasQ6VB84
HPRD17011
IPIIPI00399264   
Protein Interaction databases
DIP (DOE-UCLA)Q6VB84
IntAct (EBI)Q6VB84
FunCoupENSG00000187559
BioGRIDFOXD4L3
STRING (EMBL)FOXD4L3
ZODIACFOXD4L3
Ontologies - Pathways
QuickGOQ6VB84
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXD4L3
Atlas of Cancer Signalling NetworkFOXD4L3
Wikipedia pathwaysFOXD4L3
Orthology - Evolution
OrthoDB286380
GeneTree (enSembl)ENSG00000187559
Phylogenetic Trees/Animal Genes : TreeFamFOXD4L3
HOVERGENQ6VB84
HOGENOMQ6VB84
Homologs : HomoloGeneFOXD4L3
Homology/Alignments : Family Browser (UCSC)FOXD4L3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD4L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD4L3
dbVarFOXD4L3
ClinVarFOXD4L3
1000_GenomesFOXD4L3 
Exome Variant ServerFOXD4L3
ExAC (Exome Aggregation Consortium)FOXD4L3 (select the gene name)
Genetic variants : HAPMAP286380
Genomic Variants (DGV)FOXD4L3 [DGVbeta]
DECIPHERFOXD4L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXD4L3 
Mutations
ICGC Data PortalFOXD4L3 
TCGA Data PortalFOXD4L3 
Broad Tumor PortalFOXD4L3
OASIS PortalFOXD4L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD4L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXD4L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD4L3
DgiDB (Drug Gene Interaction Database)FOXD4L3
DoCM (Curated mutations)FOXD4L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD4L3 (select a term)
intoGenFOXD4L3
Cancer3DFOXD4L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611086   
Orphanet
MedgenFOXD4L3
Genetic Testing Registry FOXD4L3
NextProtQ6VB84 [Medical]
TSGene286380
GENETestsFOXD4L3
Target ValidationFOXD4L3
Huge Navigator FOXD4L3 [HugePedia]
snp3D : Map Gene to Disease286380
BioCentury BCIQFOXD4L3
ClinGenFOXD4L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286380
Chemical/Pharm GKB GenePA134941846
Clinical trialFOXD4L3
Miscellaneous
canSAR (ICR)FOXD4L3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXD4L3
EVEXFOXD4L3
GoPubMedFOXD4L3
iHOPFOXD4L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:15 CEST 2017

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