Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXD4L4 (forkhead box D4-like 4)

Identity

Alias_namesFOXD4L2
forkhead box D4-like 2
Alias_symbol (synonym)bA460E7.2
OTTHUMG00000013337
OTTHUMG00000066752
Other aliasFOXD4b
HGNC (Hugo) FOXD4L4
LocusID (NCBI) 349334
Atlas_Id 47136
Location 9p12  [Link to chromosome band 9p12]
Location_base_pair Starts at 42718066 and ends at 42719316 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXD4L4   23762
Cards
Entrez_Gene (NCBI)FOXD4L4  349334  forkhead box D4-like 4
AliasesFOXD4L2; FOXD4b; bA460E7.2
GeneCards (Weizmann)FOXD4L4
Ensembl hg19 (Hinxton)ENSG00000184659 [Gene_View]  chr9:42718066-42719316 [Contig_View]  FOXD4L4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184659 [Gene_View]  chr9:42718066-42719316 [Contig_View]  FOXD4L4 [Vega]
ICGC DataPortalENSG00000184659
TCGA cBioPortalFOXD4L4
AceView (NCBI)FOXD4L4
Genatlas (Paris)FOXD4L4
WikiGenes349334
SOURCE (Princeton)FOXD4L4
Genetics Home Reference (NIH)FOXD4L4
Genomic and cartography
GoldenPath hg19 (UCSC)FOXD4L4  -     chr9:42718066-42719316 +  9p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FOXD4L4  -     9p12   [Description]    (hg38-Dec_2013)
EnsemblFOXD4L4 - 9p12 [CytoView hg19]  FOXD4L4 - 9p12 [CytoView hg38]
Mapping of homologs : NCBIFOXD4L4 [Mapview hg19]  FOXD4L4 [Mapview hg38]
OMIM611085   
Gene and transcription
Genbank (Entrez)BC172340
RefSeq transcript (Entrez)NM_001099279 NM_199244
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_078055 NW_004929362
Consensus coding sequences : CCDS (NCBI)FOXD4L4
Cluster EST : UnigeneHs.712520 [ NCBI ]
CGAP (NCI)Hs.712520
Alternative Splicing GalleryENSG00000184659
Gene ExpressionFOXD4L4 [ NCBI-GEO ]   FOXD4L4 [ EBI - ARRAY_EXPRESS ]   FOXD4L4 [ SEEK ]   FOXD4L4 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD4L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)349334
GTEX Portal (Tissue expression)FOXD4L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXT5
Splice isoforms : SwissVarQ8WXT5
PhosPhoSitePlusQ8WXT5
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD4L4
DMDM Disease mutations349334
Blocks (Seattle)FOXD4L4
SuperfamilyQ8WXT5
Human Protein AtlasENSG00000184659
Peptide AtlasQ8WXT5
HPRD17013
Protein Interaction databases
DIP (DOE-UCLA)Q8WXT5
IntAct (EBI)Q8WXT5
FunCoupENSG00000184659
BioGRIDFOXD4L4
STRING (EMBL)FOXD4L4
ZODIACFOXD4L4
Ontologies - Pathways
QuickGOQ8WXT5
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXD4L4
Atlas of Cancer Signalling NetworkFOXD4L4
Wikipedia pathwaysFOXD4L4
Orthology - Evolution
OrthoDB349334
GeneTree (enSembl)ENSG00000184659
Phylogenetic Trees/Animal Genes : TreeFamFOXD4L4
HOVERGENQ8WXT5
HOGENOMQ8WXT5
Homologs : HomoloGeneFOXD4L4
Homology/Alignments : Family Browser (UCSC)FOXD4L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD4L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD4L4
dbVarFOXD4L4
ClinVarFOXD4L4
1000_GenomesFOXD4L4 
Exome Variant ServerFOXD4L4
ExAC (Exome Aggregation Consortium)FOXD4L4 (select the gene name)
Genetic variants : HAPMAP349334
Genomic Variants (DGV)FOXD4L4 [DGVbeta]
DECIPHER (Syndromes)9:42718066-42719316  ENSG00000184659
CONAN: Copy Number AnalysisFOXD4L4 
Mutations
ICGC Data PortalFOXD4L4 
TCGA Data PortalFOXD4L4 
Broad Tumor PortalFOXD4L4
OASIS PortalFOXD4L4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD4L4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXD4L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD4L4
DgiDB (Drug Gene Interaction Database)FOXD4L4
DoCM (Curated mutations)FOXD4L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD4L4 (select a term)
intoGenFOXD4L4
Cancer3DFOXD4L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611085   
Orphanet
MedgenFOXD4L4
Genetic Testing Registry FOXD4L4
NextProtQ8WXT5 [Medical]
TSGene349334
GENETestsFOXD4L4
Huge Navigator FOXD4L4 [HugePedia]
snp3D : Map Gene to Disease349334
BioCentury BCIQFOXD4L4
ClinGenFOXD4L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD349334
Chemical/Pharm GKB GenePA142671752
Clinical trialFOXD4L4
Miscellaneous
canSAR (ICR)FOXD4L4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXD4L4
EVEXFOXD4L4
GoPubMedFOXD4L4
iHOPFOXD4L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:06:29 CET 2017

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