Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXD4L5 (forkhead box D4-like 5)

Identity

Alias_symbol (synonym)bA15J10.2
OTTHUMG00000013332
Other alias
HGNC (Hugo) FOXD4L5
LocusID (NCBI) 653427
Atlas_Id 63564
Location 9q21.11  [Link to chromosome band 9q21]
Location_base_pair Starts at 65282101 and ends at 65285209 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXD4L5   18522
Cards
Entrez_Gene (NCBI)FOXD4L5  653427  forkhead box D4-like 5
AliasesbA15J10.2
GeneCards (Weizmann)FOXD4L5
Ensembl hg19 (Hinxton)ENSG00000204779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204779 [Gene_View]  chr9:65282101-65285209 [Contig_View]  FOXD4L5 [Vega]
ICGC DataPortalENSG00000204779
TCGA cBioPortalFOXD4L5
AceView (NCBI)FOXD4L5
Genatlas (Paris)FOXD4L5
WikiGenes653427
SOURCE (Princeton)FOXD4L5
Genetics Home Reference (NIH)FOXD4L5
Genomic and cartography
GoldenPath hg38 (UCSC)FOXD4L5  -     chr9:65282101-65285209 -  9q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXD4L5  -     9q21.11   [Description]    (hg19-Feb_2009)
EnsemblFOXD4L5 - 9q21.11 [CytoView hg19]  FOXD4L5 - 9q21.11 [CytoView hg38]
Mapping of homologs : NCBIFOXD4L5 [Mapview hg19]  FOXD4L5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001126334
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXD4L5
Cluster EST : UnigeneHs.714683 [ NCBI ]
CGAP (NCI)Hs.714683
Alternative Splicing GalleryENSG00000204779
Gene ExpressionFOXD4L5 [ NCBI-GEO ]   FOXD4L5 [ EBI - ARRAY_EXPRESS ]   FOXD4L5 [ SEEK ]   FOXD4L5 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD4L5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653427
GTEX Portal (Tissue expression)FOXD4L5
Human Protein AtlasENSG00000204779-FOXD4L5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VV16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VV16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VV16
Splice isoforms : SwissVarQ5VV16
PhosPhoSitePlusQ5VV16
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD4L5
DMDM Disease mutations653427
Blocks (Seattle)FOXD4L5
SuperfamilyQ5VV16
Human Protein Atlas [tissue]ENSG00000204779-FOXD4L5 [tissue]
Peptide AtlasQ5VV16
IPIIPI00855883   
Protein Interaction databases
DIP (DOE-UCLA)Q5VV16
IntAct (EBI)Q5VV16
FunCoupENSG00000204779
BioGRIDFOXD4L5
STRING (EMBL)FOXD4L5
ZODIACFOXD4L5
Ontologies - Pathways
QuickGOQ5VV16
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXD4L5
Atlas of Cancer Signalling NetworkFOXD4L5
Wikipedia pathwaysFOXD4L5
Orthology - Evolution
OrthoDB653427
GeneTree (enSembl)ENSG00000204779
Phylogenetic Trees/Animal Genes : TreeFamFOXD4L5
HOVERGENQ5VV16
HOGENOMQ5VV16
Homologs : HomoloGeneFOXD4L5
Homology/Alignments : Family Browser (UCSC)FOXD4L5
Gene fusions - Rearrangements
Tumor Fusion PortalFOXD4L5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD4L5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD4L5
dbVarFOXD4L5
ClinVarFOXD4L5
1000_GenomesFOXD4L5 
Exome Variant ServerFOXD4L5
ExAC (Exome Aggregation Consortium)ENSG00000204779
GNOMAD BrowserENSG00000204779
Genetic variants : HAPMAP653427
Genomic Variants (DGV)FOXD4L5 [DGVbeta]
DECIPHERFOXD4L5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXD4L5 
Mutations
ICGC Data PortalFOXD4L5 
TCGA Data PortalFOXD4L5 
Broad Tumor PortalFOXD4L5
OASIS PortalFOXD4L5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXD4L5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXD4L5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD4L5
DgiDB (Drug Gene Interaction Database)FOXD4L5
DoCM (Curated mutations)FOXD4L5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD4L5 (select a term)
intoGenFOXD4L5
Cancer3DFOXD4L5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFOXD4L5
MedgenFOXD4L5
Genetic Testing Registry FOXD4L5
NextProtQ5VV16 [Medical]
TSGene653427
GENETestsFOXD4L5
Target ValidationFOXD4L5
Huge Navigator FOXD4L5 [HugePedia]
snp3D : Map Gene to Disease653427
BioCentury BCIQFOXD4L5
ClinGenFOXD4L5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653427
Chemical/Pharm GKB GenePA162388804
Clinical trialFOXD4L5
Miscellaneous
canSAR (ICR)FOXD4L5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXD4L5
EVEXFOXD4L5
GoPubMedFOXD4L5
iHOPFOXD4L5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:48 CET 2017

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