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FOXD4L6 (forkhead box D4-like 6)

Identity

Alias_symbol (synonym)OTTHUMG00000066822
Other alias-
HGNC (Hugo) FOXD4L6
LocusID (NCBI) 653404
Atlas_Id 63565
Location 9p11.2  [Link to chromosome band 9p11]
Location_base_pair Starts at 41126251 and ends at 41128975 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXD4L6   31986
Cards
Entrez_Gene (NCBI)FOXD4L6  653404  forkhead box D4-like 6
Aliases
GeneCards (Weizmann)FOXD4L6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:41126251-41128975 [Contig_View]  FOXD4L6 [Vega]
TCGA cBioPortalFOXD4L6
AceView (NCBI)FOXD4L6
Genatlas (Paris)FOXD4L6
WikiGenes653404
SOURCE (Princeton)FOXD4L6
Genetics Home Reference (NIH)FOXD4L6
Genomic and cartography
GoldenPath hg38 (UCSC)FOXD4L6  -     chr9:41126251-41128975 -  9p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXD4L6  -     9p11.2   [Description]    (hg19-Feb_2009)
EnsemblFOXD4L6 - 9p11.2 [CytoView hg19]  FOXD4L6 - 9p11.2 [CytoView hg38]
Mapping of homologs : NCBIFOXD4L6 [Mapview hg19]  FOXD4L6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF343006 BC103887 BC137365 BC137366 EU446685
RefSeq transcript (Entrez)NM_001085476
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXD4L6
Cluster EST : UnigeneHs.652377 [ NCBI ]
CGAP (NCI)Hs.652377
Gene ExpressionFOXD4L6 [ NCBI-GEO ]   FOXD4L6 [ EBI - ARRAY_EXPRESS ]   FOXD4L6 [ SEEK ]   FOXD4L6 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXD4L6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653404
GTEX Portal (Tissue expression)FOXD4L6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SYB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SYB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SYB3
Splice isoforms : SwissVarQ3SYB3
PhosPhoSitePlusQ3SYB3
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXD4L6
DMDM Disease mutations653404
Blocks (Seattle)FOXD4L6
SuperfamilyQ3SYB3
Peptide AtlasQ3SYB3
IPIIPI00654829   
Protein Interaction databases
DIP (DOE-UCLA)Q3SYB3
IntAct (EBI)Q3SYB3
BioGRIDFOXD4L6
STRING (EMBL)FOXD4L6
ZODIACFOXD4L6
Ontologies - Pathways
QuickGOQ3SYB3
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXD4L6
Atlas of Cancer Signalling NetworkFOXD4L6
Wikipedia pathwaysFOXD4L6
Orthology - Evolution
OrthoDB653404
Phylogenetic Trees/Animal Genes : TreeFamFOXD4L6
HOVERGENQ3SYB3
HOGENOMQ3SYB3
Homologs : HomoloGeneFOXD4L6
Homology/Alignments : Family Browser (UCSC)FOXD4L6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXD4L6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXD4L6
dbVarFOXD4L6
ClinVarFOXD4L6
1000_GenomesFOXD4L6 
Exome Variant ServerFOXD4L6
ExAC (Exome Aggregation Consortium)FOXD4L6 (select the gene name)
Genetic variants : HAPMAP653404
Genomic Variants (DGV)FOXD4L6 [DGVbeta]
DECIPHERFOXD4L6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXD4L6 
Mutations
ICGC Data PortalFOXD4L6 
TCGA Data PortalFOXD4L6 
Broad Tumor PortalFOXD4L6
OASIS PortalFOXD4L6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFOXD4L6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXD4L6
DgiDB (Drug Gene Interaction Database)FOXD4L6
DoCM (Curated mutations)FOXD4L6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXD4L6 (select a term)
intoGenFOXD4L6
Cancer3DFOXD4L6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFOXD4L6
Genetic Testing Registry FOXD4L6
NextProtQ3SYB3 [Medical]
TSGene653404
GENETestsFOXD4L6
Target ValidationFOXD4L6
Huge Navigator FOXD4L6 [HugePedia]
snp3D : Map Gene to Disease653404
BioCentury BCIQFOXD4L6
ClinGenFOXD4L6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653404
Chemical/Pharm GKB GenePA162388805
Clinical trialFOXD4L6
Miscellaneous
canSAR (ICR)FOXD4L6 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXD4L6
EVEXFOXD4L6
GoPubMedFOXD4L6
iHOPFOXD4L6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:51 CEST 2017

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