Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXE3 (forkhead box E3)

Identity

Other namesFKHL12
FREAC8
HGNC (Hugo) FOXE3
LocusID (NCBI) 2301
Location 1p33
Location_base_pair Starts at 47881744 and ends at 47883724 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FOXE3   3808
Cards
Entrez_Gene (NCBI)FOXE3  2301  forkhead box E3
GeneCards (Weizmann)FOXE3
Ensembl (Hinxton)ENSG00000186790 [Gene_View]  chr1:47881744-47883724 [Contig_View]  FOXE3 [Vega]
ICGC DataPortalENSG00000186790
cBioPortalFOXE3
AceView (NCBI)FOXE3
Genatlas (Paris)FOXE3
WikiGenes2301
SOURCE (Princeton)NM_012186
Genomic and cartography
GoldenPath (UCSC)FOXE3  -  1p33   chr1:47881744-47883724 +  1p33   [Description]    (hg19-Feb_2009)
EnsemblFOXE3 - 1p33 [CytoView]
Mapping of homologs : NCBIFOXE3 [Mapview]
OMIM107250   601094   610256   
Gene and transcription
Genbank (Entrez)AF275722 BC172358
RefSeq transcript (Entrez)NM_012186
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_016192 NT_032977 NW_001838578 NW_004929290
Consensus coding sequences : CCDS (NCBI)FOXE3
Cluster EST : UnigeneHs.112968 [ NCBI ]
CGAP (NCI)Hs.112968
Alternative Splicing : Fast-db (Paris)GSHG0000493
Alternative Splicing GalleryENSG00000186790
Gene ExpressionFOXE3 [ NCBI-GEO ]     FOXE3 [ SEEK ]   FOXE3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13461 (Uniprot)
NextProtQ13461  [Medical]
With graphics : InterProQ13461
Splice isoforms : SwissVarQ13461 (Swissvar)
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)TF_fork_head [organisation]   TF_fork_head_CS [organisation]   WHTH_DNA-bd_dom [organisation]  
Related proteins : CluSTrQ13461
Domain families : Pfam (Sanger)Fork_head (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
DMDM Disease mutations2301
Blocks (Seattle)Q13461
Human Protein AtlasENSG00000186790 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ13461
HPRD03058
IPIIPI00013354   
Protein Interaction databases
DIP (DOE-UCLA)Q13461
IntAct (EBI)Q13461
FunCoupENSG00000186790
BioGRIDFOXE3
InParanoidQ13461
Interologous Interaction database Q13461
IntegromeDBFOXE3
STRING (EMBL)FOXE3
Ontologies - Pathways
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  sequence-specific DNA binding transcription factor activity  nucleus  transcription factor complex  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  camera-type eye development  sequence-specific DNA binding  cell development  positive regulation of epithelial cell proliferation  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  sequence-specific DNA binding transcription factor activity  nucleus  transcription factor complex  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  camera-type eye development  sequence-specific DNA binding  cell development  positive regulation of epithelial cell proliferation  
Protein Interaction DatabaseFOXE3
Wikipedia pathwaysFOXE3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FOXE3
snp3D : Map Gene to Disease2301
SNP (GeneSNP Utah)FOXE3
SNP : HGBaseFOXE3
Genetic variants : HAPMAPFOXE3
Exome VariantFOXE3
1000_GenomesFOXE3 
ICGC programENSG00000186790 
Somatic Mutations in Cancer : COSMICFOXE3 
CONAN: Copy Number AnalysisFOXE3 
Mutations and Diseases : HGMDFOXE3
Mutations and Diseases : intOGenFOXE3
Genomic VariantsFOXE3  FOXE3 [DGVbeta]
dbVarFOXE3
ClinVarFOXE3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM107250    601094    610256   
MedgenFOXE3
GENETestsFOXE3
Disease Genetic AssociationFOXE3
Huge Navigator FOXE3 [HugePedia]  FOXE3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneFOXE3
Homology/Alignments : Family Browser (UCSC)FOXE3
Phylogenetic Trees/Animal Genes : TreeFamFOXE3
Chemical/Protein Interactions : CTD2301
Chemical/Pharm GKB GenePA28225
Clinical trialFOXE3
Cancer Resource (Charite)ENSG00000186790
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
CoreMineFOXE3
iHOPFOXE3
OncoSearchFOXE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:47:14 CEST 2014

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