Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXE3 (forkhead box E3)

Identity

Other namesFKHL12
FREAC8
HGNC (Hugo) FOXE3
LocusID (NCBI) 2301
Atlas_Id 46945
Location 1p33
Location_base_pair Starts at 47881744 and ends at 47883724 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXE3   3808
Cards
Entrez_Gene (NCBI)FOXE3  2301  forkhead box E3
GeneCards (Weizmann)FOXE3
Ensembl hg19 (Hinxton)ENSG00000186790 [Gene_View]  chr1:47881744-47883724 [Contig_View]  FOXE3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186790 [Gene_View]  chr1:47881744-47883724 [Contig_View]  FOXE3 [Vega]
ICGC DataPortalENSG00000186790
TCGA cBioPortalFOXE3
AceView (NCBI)FOXE3
Genatlas (Paris)FOXE3
WikiGenes2301
SOURCE (Princeton)FOXE3
Genomic and cartography
GoldenPath hg19 (UCSC)FOXE3  -     chr1:47881744-47883724 +  1p33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FOXE3  -     1p33   [Description]    (hg38-Dec_2013)
EnsemblFOXE3 - 1p33 [CytoView hg19]  FOXE3 - 1p33 [CytoView hg38]
Mapping of homologs : NCBIFOXE3 [Mapview hg19]  FOXE3 [Mapview hg38]
OMIM107250   601094   610256   
Gene and transcription
Genbank (Entrez)AF275722 BC172358 KM433708
RefSeq transcript (Entrez)NM_012186
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_016192 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)FOXE3
Cluster EST : UnigeneHs.112968 [ NCBI ]
CGAP (NCI)Hs.112968
Alternative Splicing : Fast-db (Paris)GSHG0000493
Alternative Splicing GalleryENSG00000186790
Gene ExpressionFOXE3 [ NCBI-GEO ]   FOXE3 [ EBI - ARRAY_EXPRESS ]   FOXE3 [ SEEK ]   FOXE3 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)2301
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13461 (Uniprot)
NextProtQ13461  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13461
Splice isoforms : SwissVarQ13461 (Swissvar)
PhosPhoSitePlusQ13461
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
DMDM Disease mutations2301
Blocks (Seattle)FOXE3
SuperfamilyQ13461
Human Protein AtlasENSG00000186790
Peptide AtlasQ13461
HPRD03058
IPIIPI00013354   
Protein Interaction databases
DIP (DOE-UCLA)Q13461
IntAct (EBI)Q13461
FunCoupENSG00000186790
BioGRIDFOXE3
STRING (EMBL)FOXE3
ZODIACFOXE3
Ontologies - Pathways
QuickGOQ13461
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  lens development in camera-type eye  trabecular meshwork development  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription factor complex  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  negative regulation of apoptotic process  sequence-specific DNA binding  cell development  iris morphogenesis  ciliary body morphogenesis  cornea development in camera-type eye  negative regulation of cell cycle arrest  negative regulation of lens fiber cell differentiation  positive regulation of lens epithelial cell proliferation  positive regulation of lens epithelial cell proliferation  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  lens development in camera-type eye  trabecular meshwork development  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription factor complex  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  negative regulation of apoptotic process  sequence-specific DNA binding  cell development  iris morphogenesis  ciliary body morphogenesis  cornea development in camera-type eye  negative regulation of cell cycle arrest  negative regulation of lens fiber cell differentiation  positive regulation of lens epithelial cell proliferation  positive regulation of lens epithelial cell proliferation  
NDEx Network
Atlas of Cancer Signalling NetworkFOXE3
Wikipedia pathwaysFOXE3
Orthology - Evolution
OrthoDB2301
GeneTree (enSembl)ENSG00000186790
Phylogenetic Trees/Animal Genes : TreeFamFOXE3
Homologs : HomoloGeneFOXE3
Homology/Alignments : Family Browser (UCSC)FOXE3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFOXE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXE3
dbVarFOXE3
ClinVarFOXE3
1000_GenomesFOXE3 
Exome Variant ServerFOXE3
ExAC (Exome Aggregation Consortium)FOXE3 (select the gene name)
SNP (GeneSNP Utah)FOXE3
SNP : HGBaseFOXE3
Genetic variants : HAPMAPFOXE3
Genomic Variants (DGV)FOXE3 [DGVbeta]
Mutations
ICGC Data PortalFOXE3 
TCGA Data PortalFOXE3 
Broad Tumor PortalFOXE3
OASIS PortalFOXE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXE3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXE3
DgiDB (Drug Gene Interaction Database)FOXE3
DoCM (Curated mutations)FOXE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXE3 (select a term)
intoGenFOXE3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:47881744-47883724
CONAN: Copy Number AnalysisFOXE3 
Mutations and Diseases : HGMDFOXE3
OMIM107250    601094    610256   
MedgenFOXE3
Genetic Testing Registry FOXE3
NextProtQ13461 [Medical]
TSGene2301
GENETestsFOXE3
Huge Navigator FOXE3 [HugePedia]  FOXE3 [HugeCancerGEM]
snp3D : Map Gene to Disease2301
BioCentury BCIQFOXE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2301
Chemical/Pharm GKB GenePA28225
Clinical trialFOXE3
Miscellaneous
canSAR (ICR)FOXE3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXE3
GoPubMedFOXE3
iHOPFOXE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:45:16 CEST 2016

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