Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXG1 (forkhead box G1)

Identity

Other namesBF1
BF2
FHKL3
FKH2
FKHL1
FKHL2
FKHL3
FKHL4
FOXG1A
FOXG1B
FOXG1C
HBF-1
HBF-2
HBF-3
HBF-G2
HBF2
HFK1
HFK2
HFK3
KHL2
QIN
HGNC (Hugo) FOXG1
LocusID (NCBI) 2290
Location 14q12
Location_base_pair Starts at 29236278 and ends at 29239483 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FOXG1   3811
Cards
Entrez_Gene (NCBI)FOXG1  2290  forkhead box G1
GeneCards (Weizmann)FOXG1
Ensembl (Hinxton)ENSG00000176165 [Gene_View]  chr14:29236278-29239483 [Contig_View]  FOXG1 [Vega]
ICGC DataPortalENSG00000176165
cBioPortalFOXG1
AceView (NCBI)FOXG1
Genatlas (Paris)FOXG1
WikiGenes2290
SOURCE (Princeton)NM_005249
Genomic and cartography
GoldenPath (UCSC)FOXG1  -  14q12   chr14:29236278-29239483 +  14q12   [Description]    (hg19-Feb_2009)
EnsemblFOXG1 - 14q12 [CytoView]
Mapping of homologs : NCBIFOXG1 [Mapview]
OMIM164874   613454   
Gene and transcription
Genbank (Entrez)BC035020 BC040960 BC050072 DR001113 U44097
RefSeq transcript (Entrez)NM_005249
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NG_009367 NT_026437 NW_001838110 NW_004929393
Consensus coding sequences : CCDS (NCBI)FOXG1
Cluster EST : UnigeneHs.741222 [ NCBI ]
CGAP (NCI)Hs.741222
Alternative Splicing : Fast-db (Paris)GSHG0008759
Alternative Splicing GalleryENSG00000176165
Gene ExpressionFOXG1 [ NCBI-GEO ]     FOXG1 [ SEEK ]   FOXG1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55316 (Uniprot)
NextProtP55316  [Medical]
With graphics : InterProP55316
Splice isoforms : SwissVarP55316 (Swissvar)
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)TF_fork_head [organisation]   TF_fork_head_CS [organisation]   WHTH_DNA-bd_dom [organisation]  
Related proteins : CluSTrP55316
Domain families : Pfam (Sanger)Fork_head (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
DMDM Disease mutations2290
Blocks (Seattle)P55316
Human Protein AtlasENSG00000176165 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP55316
HPRD01283
IPIIPI00024386   
Protein Interaction databases
DIP (DOE-UCLA)P55316
IntAct (EBI)P55316
FunCoupENSG00000176165
BioGRIDFOXG1
InParanoidP55316
Interologous Interaction database P55316
IntegromeDBFOXG1
STRING (EMBL)FOXG1
Ontologies - Pathways
Ontology : AmiGOpositive regulation of neuroblast proliferation  DNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of mitotic cell cycle  brain development  aging  dorsal/ventral pattern formation  axon midline choice point recognition  pyramidal neuron migration  inner ear morphogenesis  sequence-specific DNA binding  negative regulation of neuron differentiation  positive regulation of cell cycle  negative regulation of transcription, DNA-templated  neuron fate determination  
Ontology : EGO-EBIpositive regulation of neuroblast proliferation  DNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of mitotic cell cycle  brain development  aging  dorsal/ventral pattern formation  axon midline choice point recognition  pyramidal neuron migration  inner ear morphogenesis  sequence-specific DNA binding  negative regulation of neuron differentiation  positive regulation of cell cycle  negative regulation of transcription, DNA-templated  neuron fate determination  
Pathways : KEGGFoxO signaling pathway   
Protein Interaction DatabaseFOXG1
Wikipedia pathwaysFOXG1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FOXG1
snp3D : Map Gene to Disease2290
SNP (GeneSNP Utah)FOXG1
SNP : HGBaseFOXG1
Genetic variants : HAPMAPFOXG1
Exome VariantFOXG1
1000_GenomesFOXG1 
ICGC programENSG00000176165 
Somatic Mutations in Cancer : COSMICFOXG1 
CONAN: Copy Number AnalysisFOXG1 
Mutations and Diseases : HGMDFOXG1
Mutations and Diseases : intOGenFOXG1
Genomic VariantsFOXG1  FOXG1 [DGVbeta]
dbVarFOXG1
ClinVarFOXG1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM164874    613454   
MedgenFOXG1
GENETestsFOXG1
Disease Genetic AssociationFOXG1
Huge Navigator FOXG1 [HugePedia]  FOXG1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneFOXG1
Homology/Alignments : Family Browser (UCSC)FOXG1
Phylogenetic Trees/Animal Genes : TreeFamFOXG1
Chemical/Protein Interactions : CTD2290
Chemical/Pharm GKB GenePA162388806
Clinical trialFOXG1
Cancer Resource (Charite)ENSG00000176165
Other databases
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
CoreMineFOXG1
iHOPFOXG1
OncoSearchFOXG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:51:55 CEST 2014

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