Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

URGENT NEED of MONEY :
GO to the page SAVE the Atlas and DONATE

FOXG1 (forkhead box G1)

Identity

Other namesBF1
BF2
FHKL3
FKH2
FKHL1
FKHL2
FKHL3
FKHL4
FOXG1A
FOXG1B
FOXG1C
HBF-1
HBF-2
HBF-3
HBF-G2
HBF2
HFK1
HFK2
HFK3
KHL2
QIN
HGNC (Hugo) FOXG1
LocusID (NCBI) 2290
Atlas_Id 40629
Location 14q12
Location_base_pair Starts at 29236278 and ends at 29239483 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945

External links

Nomenclature
HGNC (Hugo)FOXG1   3811
Cards
Entrez_Gene (NCBI)FOXG1  2290  forkhead box G1
GeneCards (Weizmann)FOXG1
Ensembl hg19 (Hinxton)ENSG00000176165 [Gene_View]  chr14:29236278-29239483 [Contig_View]  FOXG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176165 [Gene_View]  chr14:29236278-29239483 [Contig_View]  FOXG1 [Vega]
ICGC DataPortalENSG00000176165
TCGA cBioPortalFOXG1
AceView (NCBI)FOXG1
Genatlas (Paris)FOXG1
WikiGenes2290
SOURCE (Princeton)FOXG1
Genomic and cartography
GoldenPath hg19 (UCSC)FOXG1  -     chr14:29236278-29239483 +  14q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FOXG1  -     14q12   [Description]    (hg38-Dec_2013)
EnsemblFOXG1 - 14q12 [CytoView hg19]  FOXG1 - 14q12 [CytoView hg38]
Mapping of homologs : NCBIFOXG1 [Mapview hg19]  FOXG1 [Mapview hg38]
OMIM164874   613454   
Gene and transcription
Genbank (Entrez)BC035020 BC040960 BC050072 DR001113 U44097
RefSeq transcript (Entrez)NM_005249
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_009367 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)FOXG1
Cluster EST : UnigeneHs.741222 [ NCBI ]
CGAP (NCI)Hs.741222
Alternative Splicing : Fast-db (Paris)GSHG0008759
Alternative Splicing GalleryENSG00000176165
Gene ExpressionFOXG1 [ NCBI-GEO ]     FOXG1 [ SEEK ]   FOXG1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55316 (Uniprot)
NextProtP55316  [Medical]
With graphics : InterProP55316
Splice isoforms : SwissVarP55316 (Swissvar)
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)TF_fork_head    TF_fork_head_CS    WHTH_DNA-bd_dom   
Related proteins : CluSTrP55316
Domain families : Pfam (Sanger)Fork_head (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
DMDM Disease mutations2290
Blocks (Seattle)P55316
Human Protein AtlasENSG00000176165
Peptide AtlasP55316
HPRD01283
IPIIPI00024386   
Protein Interaction databases
DIP (DOE-UCLA)P55316
IntAct (EBI)P55316
FunCoupENSG00000176165
BioGRIDFOXG1
IntegromeDBFOXG1
STRING (EMBL)FOXG1
Ontologies - Pathways
QuickGOP55316
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  brain development  aging  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  brain development  aging  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  
Pathways : KEGGFoxO signaling pathway   
Protein Interaction DatabaseFOXG1
DoCM (Curated mutations)FOXG1
Wikipedia pathwaysFOXG1
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerFOXG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXG1
dbVarFOXG1
ClinVarFOXG1
1000_GenomesFOXG1 
Exome Variant ServerFOXG1
SNP (GeneSNP Utah)FOXG1
SNP : HGBaseFOXG1
Genetic variants : HAPMAPFOXG1
Genomic Variants (DGV)FOXG1 [DGVbeta]
Mutations
ICGC Data PortalFOXG1 
TCGA Data PortalFOXG1 
Tumor PortalFOXG1
Somatic Mutations in Cancer : COSMICFOXG1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)14:29236278-29239483
CONAN: Copy Number AnalysisFOXG1 
Mutations and Diseases : HGMDFOXG1
OMIM164874    613454   
MedgenFOXG1
NextProtP55316 [Medical]
GENETestsFOXG1
Disease Genetic AssociationFOXG1
Huge Navigator FOXG1 [HugePedia]  FOXG1 [HugeCancerGEM]
snp3D : Map Gene to Disease2290
DGIdb (Drug Gene Interaction db)FOXG1
General knowledge
Homologs : HomoloGeneFOXG1
Homology/Alignments : Family Browser (UCSC)FOXG1
Phylogenetic Trees/Animal Genes : TreeFamFOXG1
Chemical/Protein Interactions : CTD2290
Chemical/Pharm GKB GenePA162388806
Clinical trialFOXG1
Cancer Resource (Charite)ENSG00000176165
Other databases
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
CoreMineFOXG1
GoPubMedFOXG1
iHOPFOXG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 20 19:17:59 CEST 2015

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.