Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXH1 (forkhead box H1)

Identity

Alias_symbol (synonym)FAST1
Other aliasFAST-1
HGNC (Hugo) FOXH1
LocusID (NCBI) 8928
Atlas_Id 46704
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 145699115 and ends at 145701718 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXH1   3814
Cards
Entrez_Gene (NCBI)FOXH1  8928  forkhead box H1
AliasesFAST-1; FAST1
GeneCards (Weizmann)FOXH1
Ensembl hg19 (Hinxton)ENSG00000160973 [Gene_View]  chr8:145699115-145701718 [Contig_View]  FOXH1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160973 [Gene_View]  chr8:145699115-145701718 [Contig_View]  FOXH1 [Vega]
ICGC DataPortalENSG00000160973
TCGA cBioPortalFOXH1
AceView (NCBI)FOXH1
Genatlas (Paris)FOXH1
WikiGenes8928
SOURCE (Princeton)FOXH1
Genetics Home Reference (NIH)FOXH1
Genomic and cartography
GoldenPath hg19 (UCSC)FOXH1  -     chr8:145699115-145701718 -  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FOXH1  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblFOXH1 - 8q24.3 [CytoView hg19]  FOXH1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIFOXH1 [Mapview hg19]  FOXH1 [Mapview hg38]
OMIM603621   
Gene and transcription
Genbank (Entrez)AF076292 BC051376 BC065377 BC111604 BE550635
RefSeq transcript (Entrez)NM_003923
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_030003 NT_008046 NW_004929341
Consensus coding sequences : CCDS (NCBI)FOXH1
Cluster EST : UnigeneHs.708365 [ NCBI ]
CGAP (NCI)Hs.708365
Alternative Splicing GalleryENSG00000160973
Gene ExpressionFOXH1 [ NCBI-GEO ]   FOXH1 [ EBI - ARRAY_EXPRESS ]   FOXH1 [ SEEK ]   FOXH1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8928
GTEX Portal (Tissue expression)FOXH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75593   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75593  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75593
Splice isoforms : SwissVarO75593
PhosPhoSitePlusO75593
Domaine pattern : Prosite (Expaxy)FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXH1
DMDM Disease mutations8928
Blocks (Seattle)FOXH1
SuperfamilyO75593
Human Protein AtlasENSG00000160973
Peptide AtlasO75593
HPRD04689
IPIIPI00026214   IPI00439760   
Protein Interaction databases
DIP (DOE-UCLA)O75593
IntAct (EBI)O75593
FunCoupENSG00000160973
BioGRIDFOXH1
STRING (EMBL)FOXH1
ZODIACFOXH1
Ontologies - Pathways
QuickGOO75593
Ontology : AmiGOnuclear chromatin  RNA polymerase II transcription factor activity, sequence-specific DNA binding  RNA polymerase II transcription cofactor activity  transcriptional activator activity, RNA polymerase II transcription factor binding  transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding  heart looping  secondary heart field specification  outflow tract morphogenesis  cardiac right ventricle morphogenesis  ventricular trabecula myocardium morphogenesis  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleoplasm  transcription factor complex  transcription from RNA polymerase II promoter  transforming growth factor beta receptor signaling pathway  transforming growth factor beta receptor signaling pathway  protein domain specific binding  activin responsive factor complex  negative regulation of intracellular estrogen receptor signaling pathway  embryonic heart tube anterior/posterior pattern specification  enhancer binding  aorta morphogenesis  bHLH transcription factor binding  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  SMAD binding  axial mesoderm development  androgen receptor binding  negative regulation of androgen receptor signaling pathway  co-SMAD binding  R-SMAD binding  R-SMAD binding  nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry  negative regulation of androgen receptor activity  
Ontology : EGO-EBInuclear chromatin  RNA polymerase II transcription factor activity, sequence-specific DNA binding  RNA polymerase II transcription cofactor activity  transcriptional activator activity, RNA polymerase II transcription factor binding  transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding  heart looping  secondary heart field specification  outflow tract morphogenesis  cardiac right ventricle morphogenesis  ventricular trabecula myocardium morphogenesis  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleoplasm  transcription factor complex  transcription from RNA polymerase II promoter  transforming growth factor beta receptor signaling pathway  transforming growth factor beta receptor signaling pathway  protein domain specific binding  activin responsive factor complex  negative regulation of intracellular estrogen receptor signaling pathway  embryonic heart tube anterior/posterior pattern specification  enhancer binding  aorta morphogenesis  bHLH transcription factor binding  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  SMAD binding  axial mesoderm development  androgen receptor binding  negative regulation of androgen receptor signaling pathway  co-SMAD binding  R-SMAD binding  R-SMAD binding  nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry  negative regulation of androgen receptor activity  
NDEx NetworkFOXH1
Atlas of Cancer Signalling NetworkFOXH1
Wikipedia pathwaysFOXH1
Orthology - Evolution
OrthoDB8928
GeneTree (enSembl)ENSG00000160973
Phylogenetic Trees/Animal Genes : TreeFamFOXH1
HOVERGENO75593
HOGENOMO75593
Homologs : HomoloGeneFOXH1
Homology/Alignments : Family Browser (UCSC)FOXH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXH1
dbVarFOXH1
ClinVarFOXH1
1000_GenomesFOXH1 
Exome Variant ServerFOXH1
ExAC (Exome Aggregation Consortium)FOXH1 (select the gene name)
Genetic variants : HAPMAP8928
Genomic Variants (DGV)FOXH1 [DGVbeta]
DECIPHER (Syndromes)8:145699115-145701718  ENSG00000160973
CONAN: Copy Number AnalysisFOXH1 
Mutations
ICGC Data PortalFOXH1 
TCGA Data PortalFOXH1 
Broad Tumor PortalFOXH1
OASIS PortalFOXH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXH1
DgiDB (Drug Gene Interaction Database)FOXH1
DoCM (Curated mutations)FOXH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXH1 (select a term)
intoGenFOXH1
Cancer3DFOXH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603621   
Orphanet20436    20435    18904    12486    12484    12485   
MedgenFOXH1
Genetic Testing Registry FOXH1
NextProtO75593 [Medical]
TSGene8928
GENETestsFOXH1
Huge Navigator FOXH1 [HugePedia]
snp3D : Map Gene to Disease8928
BioCentury BCIQFOXH1
ClinGenFOXH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8928
Chemical/Pharm GKB GenePA28231
Clinical trialFOXH1
Miscellaneous
canSAR (ICR)FOXH1 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXH1
EVEXFOXH1
GoPubMedFOXH1
iHOPFOXH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:06:30 CET 2017

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