| Nomenclature |
|---|
| HGNC (Hugo) | FOXI1 3815 |
| Cards |
|---|
| Entrez_Gene (NCBI) | FOXI1 2299 forkhead box I1 |
| Aliases | FKH10; FKHL10; FREAC-6; FREAC6; |
| HFH-3; HFH3 |
| GeneCards (Weizmann) | FOXI1 |
| Ensembl hg19 (Hinxton) | ENSG00000168269 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000168269 [Gene_View] chr5:170105913-170109725 [Contig_View] FOXI1 [Vega] |
| ICGC DataPortal | ENSG00000168269 |
| TCGA cBioPortal | FOXI1 |
| AceView (NCBI) | FOXI1 |
| Genatlas (Paris) | FOXI1 |
| WikiGenes | 2299 |
| SOURCE (Princeton) | FOXI1 |
| Genetics Home Reference (NIH) | FOXI1 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | FOXI1 - chr5:170105913-170109725 + 5q35.1 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | FOXI1 - 5q35.1 [Description] (hg19-Feb_2009) |
| Ensembl | FOXI1 - 5q35.1 [CytoView hg19] FOXI1 - 5q35.1 [CytoView hg38] |
| Mapping of homologs : NCBI | FOXI1 [Mapview hg19] FOXI1 [Mapview hg38] |
| OMIM | 274600 600791 601093 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK292176 AY707089 BC029778 L13203 |
| RefSeq transcript (Entrez) | NM_012188 NM_144769 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | FOXI1 |
| Cluster EST : Unigene | Hs.87236 [ NCBI ] |
| CGAP (NCI) | Hs.87236 |
| Alternative Splicing Gallery | ENSG00000168269 |
| Gene Expression | FOXI1 [ NCBI-GEO ] FOXI1 [ EBI - ARRAY_EXPRESS ]
FOXI1 [ SEEK ] FOXI1 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | FOXI1 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevisible | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 2299 |
| GTEX Portal (Tissue expression) | FOXI1 |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q12951 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q12951 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q12951 |
| Splice isoforms : SwissVar | Q12951 |
| PhosPhoSitePlus | Q12951 |
| Domaine pattern : Prosite (Expaxy) | FORK_HEAD_1 (PS00657) FORK_HEAD_2 (PS00658) FORK_HEAD_3 (PS50039) |
| Domains : Interpro (EBI) | Fork_head_dom Foxi1 TF_fork_head_CS_1 TF_fork_head_CS_2 WHTH_DNA-bd_dom |
| Domain families : Pfam (Sanger) | Forkhead (PF00250) |
| Domain families : Pfam (NCBI) | pfam00250 |
| Domain families : Smart (EMBL) | FH (SM00339) |
| Conserved Domain (NCBI) | FOXI1 |
| DMDM Disease mutations | 2299 |
| Blocks (Seattle) | FOXI1 |
| Superfamily | Q12951 |
| Human Protein Atlas | ENSG00000168269 |
| Peptide Atlas | Q12951 |
| HPRD | 03057 |
| IPI | IPI00220405 IPI00158272 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q12951 |
| IntAct (EBI) | Q12951 |
| FunCoup | ENSG00000168269 |
| BioGRID | FOXI1 |
| STRING (EMBL) | FOXI1 |
| ZODIAC | FOXI1 |
| Ontologies - Pathways |
|---|
| QuickGO | Q12951 |
| Ontology : AmiGO | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding transcription factor activity, sequence-specific DNA binding nucleus nucleus nucleolus transcription from RNA polymerase II promoter DNA binding, bending embryo development inner ear morphogenesis intracellular membrane-bounded organelle sequence-specific DNA binding transcription regulatory region DNA binding positive regulation of transcription from RNA polymerase II promoter |
| Ontology : EGO-EBI | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding transcription factor activity, sequence-specific DNA binding nucleus nucleus nucleolus transcription from RNA polymerase II promoter DNA binding, bending embryo development inner ear morphogenesis intracellular membrane-bounded organelle sequence-specific DNA binding transcription regulatory region DNA binding positive regulation of transcription from RNA polymerase II promoter |
| NDEx Network | FOXI1 |
| Atlas of Cancer Signalling Network | FOXI1 |
| Wikipedia pathways | FOXI1 |
| Orthology - Evolution |
|---|
| OrthoDB | 2299 |
| GeneTree (enSembl) | ENSG00000168269 |
| Phylogenetic Trees/Animal Genes : TreeFam | FOXI1 |
| HOVERGEN | Q12951 |
| HOGENOM | Q12951 |
| Homologs : HomoloGene | FOXI1 |
| Homology/Alignments : Family Browser (UCSC) | FOXI1 |
| Gene fusions - Rearrangements |
|---|
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | FOXI1 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | FOXI1 |
| dbVar | FOXI1 |
| ClinVar | FOXI1 |
| 1000_Genomes | FOXI1 |
| Exome Variant Server | FOXI1 |
| ExAC (Exome Aggregation Consortium) | FOXI1 (select the gene name) |
| Genetic variants : HAPMAP | 2299 |
| Genomic Variants (DGV) | FOXI1 [DGVbeta] |
| DECIPHER | FOXI1 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | FOXI1 |
| Mutations |
|---|
| ICGC Data Portal | FOXI1 |
| TCGA Data Portal | FOXI1 |
| Broad Tumor Portal | FOXI1 |
| OASIS Portal | FOXI1 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | FOXI1 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | FOXI1 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| LOVD (Leiden Open Variation Database) | MSeqDR-LSDB Mitochondrial Disease Locus Specific Database |
| BioMuta | search FOXI1 |
| DgiDB (Drug Gene Interaction Database) | FOXI1 |
| DoCM (Curated mutations) | FOXI1 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | FOXI1 (select a term) |
| intoGen | FOXI1 |
| Cancer3D | FOXI1(select the gene name) |
| Impact of mutations | [PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 274600 600791 601093 |
| Orphanet | 558 |
| Medgen | FOXI1 |
| Genetic Testing Registry | FOXI1
|
| NextProt | Q12951 [Medical] |
| TSGene | 2299 |
| GENETests | FOXI1 |
| Target Validation | FOXI1 |
| Huge Navigator |
FOXI1 [HugePedia] |
| snp3D : Map Gene to Disease | 2299 |
| BioCentury BCIQ | FOXI1 |
| ClinGen | FOXI1 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 2299 |
| Chemical/Pharm GKB Gene | PA28232 |
| Clinical trial | FOXI1 |
| Miscellaneous |
|---|
| canSAR (ICR) | FOXI1 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 20 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | FOXI1 |
| EVEX | FOXI1 |
| GoPubMed | FOXI1 |
| iHOP | FOXI1 |
