| Nomenclature |
|---|
| HGNC (Hugo) | FOXI1 3815 |
| Cards |
|---|
| Entrez_Gene (NCBI) | FOXI1 2299 forkhead box I1 |
| Aliases | FKH10; FKHL10; FREAC-6; FREAC6; |
| HFH-3; HFH3 |
| GeneCards (Weizmann) | FOXI1 |
| Ensembl hg19 (Hinxton) | ENSG00000168269 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000168269 [Gene_View] ENSG00000168269 [Sequence] chr5:170105913-170109725 [Contig_View] FOXI1 [Vega] |
| ICGC DataPortal | ENSG00000168269 |
| TCGA cBioPortal | FOXI1 |
| AceView (NCBI) | FOXI1 |
| Genatlas (Paris) | FOXI1 |
| WikiGenes | 2299 |
| SOURCE (Princeton) | FOXI1 |
| Genetics Home Reference (NIH) | FOXI1 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | FOXI1 - chr5:170105913-170109725 + 5q35.1 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | FOXI1 - 5q35.1 [Description] (hg19-Feb_2009) |
FOXI1 - 5q35.1 [CytoView hg19] FOXI1 - 5q35.1 [CytoView hg38] |
| Mapping of homologs : NCBI | FOXI1 [Mapview hg19] FOXI1 [Mapview hg38] |
| OMIM | 274600 600791 601093 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK292176 AY707089 BC029778 L13203 |
| RefSeq transcript (Entrez) | NM_012188 NM_144769 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | FOXI1 |
| Cluster EST : Unigene | Hs.87236 [ NCBI ] |
| CGAP (NCI) | Hs.87236 |
| Alternative Splicing Gallery | ENSG00000168269 |
| Gene Expression | FOXI1 [ NCBI-GEO ] FOXI1 [ EBI - ARRAY_EXPRESS ]
FOXI1 [ SEEK ] FOXI1 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | FOXI1 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 2299 |
| GTEX Portal (Tissue expression) | FOXI1 |
| Human Protein Atlas | ENSG00000168269-FOXI1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q12951 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q12951 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q12951 |
| Splice isoforms : SwissVar | Q12951 |
| PhosPhoSitePlus | Q12951 |
| Domaine pattern : Prosite (Expaxy) | FORK_HEAD_1 (PS00657) FORK_HEAD_2 (PS00658) FORK_HEAD_3 (PS50039) |
| Domains : Interpro (EBI) | Fork_head_dom Foxi1 TF_fork_head_CS_1 TF_fork_head_CS_2 WH-like_DNA-bd_sf WH_DNA-bd_sf |
| Domain families : Pfam (Sanger) | Forkhead (PF00250) |
| Domain families : Pfam (NCBI) | pfam00250 |
| Domain families : Smart (EMBL) | FH (SM00339) |
| Conserved Domain (NCBI) | FOXI1 |
| DMDM Disease mutations | 2299 |
| Blocks (Seattle) | FOXI1 |
| Superfamily | Q12951 |
| Human Protein Atlas [tissue] | ENSG00000168269-FOXI1 [tissue] |
| Peptide Atlas | Q12951 |
| HPRD | 03057 |
| IPI | IPI00220405 IPI00158273 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q12951 |
| IntAct (EBI) | Q12951 |
| FunCoup | ENSG00000168269 |
| BioGRID | FOXI1 |
| STRING (EMBL) | FOXI1 |
| ZODIAC | FOXI1 |
| Ontologies - Pathways |
|---|
| QuickGO | Q12951 |
| Ontology : AmiGO | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription factor activity nucleus nucleus nucleolus regulation of transcription by RNA polymerase II DNA binding, bending anatomical structure morphogenesis embryo development ending in birth or egg hatching cell differentiation inner ear morphogenesis intracellular membrane-bounded organelle sequence-specific DNA binding transcription regulatory region DNA binding positive regulation of transcription by RNA polymerase II |
| Ontology : EGO-EBI | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription factor activity nucleus nucleus nucleolus regulation of transcription by RNA polymerase II DNA binding, bending anatomical structure morphogenesis embryo development ending in birth or egg hatching cell differentiation inner ear morphogenesis intracellular membrane-bounded organelle sequence-specific DNA binding transcription regulatory region DNA binding positive regulation of transcription by RNA polymerase II |
| NDEx Network | FOXI1 |
| Atlas of Cancer Signalling Network | FOXI1 |
| Wikipedia pathways | FOXI1 |
| Orthology - Evolution |
|---|
| OrthoDB | 2299 |
| GeneTree (enSembl) | ENSG00000168269 |
| Phylogenetic Trees/Animal Genes : TreeFam | FOXI1 |
| HOGENOM | Q12951 |
| Homologs : HomoloGene | FOXI1 |
| Homology/Alignments : Family Browser (UCSC) | FOXI1 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | FOXI1 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | FOXI1 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | FOXI1 |
| dbVar | FOXI1 |
| ClinVar | FOXI1 |
| 1000_Genomes | FOXI1 |
| Exome Variant Server | FOXI1 |
| ExAC (Exome Aggregation Consortium) | ENSG00000168269 |
| GNOMAD Browser | ENSG00000168269 |
| Varsome Browser | FOXI1 |
| Genetic variants : HAPMAP | 2299 |
| Genomic Variants (DGV) | FOXI1 [DGVbeta] |
| DECIPHER | FOXI1 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | FOXI1 |
| Mutations |
|---|
| ICGC Data Portal | FOXI1 |
| TCGA Data Portal | FOXI1 |
| Broad Tumor Portal | FOXI1 |
| OASIS Portal | FOXI1 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | FOXI1 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | FOXI1 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| LOVD (Leiden Open Variation Database) | MSeqDR-LSDB Mitochondrial Disease Locus Specific Database |
| BioMuta | search FOXI1 |
| DgiDB (Drug Gene Interaction Database) | FOXI1 |
| DoCM (Curated mutations) | FOXI1 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | FOXI1 (select a term) |
| intoGen | FOXI1 |
| Cancer3D | FOXI1(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 274600 600791 601093 |
| Orphanet | 558 |
| DisGeNET | FOXI1 |
| Medgen | FOXI1 |
| Genetic Testing Registry | FOXI1
|
| NextProt | Q12951 [Medical] |
| TSGene | 2299 |
| GENETests | FOXI1 |
| Target Validation | FOXI1 |
| Huge Navigator |
FOXI1 [HugePedia] |
| snp3D : Map Gene to Disease | 2299 |
| BioCentury BCIQ | FOXI1 |
| ClinGen | FOXI1 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 2299 |
| Chemical/Pharm GKB Gene | PA28232 |
| Clinical trial | FOXI1 |
| Miscellaneous |
|---|
| canSAR (ICR) | FOXI1 (select the gene name) |
| DataMed Index | FOXI1 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 23 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | FOXI1 |
| EVEX | FOXI1 |
| GoPubMed | FOXI1 |
| iHOP | FOXI1 |
