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FOXI2 (forkhead box I2)

Identity

Alias (NCBI)-
HGNC (Hugo) FOXI2
HGNC Alias symbFLJ46831
LocusID (NCBI) 399823
Atlas_Id 63567
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 127737185 and ends at 127741183 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TNS3 (7p12.3) / FOXI2 (10q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FOXI2   32448
Cards
Entrez_Gene (NCBI)FOXI2    forkhead box I2
Aliases
GeneCards (Weizmann)FOXI2
Ensembl hg19 (Hinxton)ENSG00000186766 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186766 [Gene_View]  ENSG00000186766 [Sequence]  chr10:127737185-127741183 [Contig_View]  FOXI2 [Vega]
ICGC DataPortalENSG00000186766
TCGA cBioPortalFOXI2
AceView (NCBI)FOXI2
Genatlas (Paris)FOXI2
SOURCE (Princeton)FOXI2
Genetics Home Reference (NIH)FOXI2
Genomic and cartography
GoldenPath hg38 (UCSC)FOXI2  -     chr10:127737185-127741183 +  10q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXI2  -     10q26.2   [Description]    (hg19-Feb_2009)
GoldenPathFOXI2 - 10q26.2 [CytoView hg19]  FOXI2 - 10q26.2 [CytoView hg38]
ImmunoBaseENSG00000186766
Genome Data Viewer NCBIFOXI2 [Mapview hg19]  
OMIM617202   
Gene and transcription
Genbank (Entrez)AK128865 BC137296 BC137297
RefSeq transcript (Entrez)NM_207426
Consensus coding sequences : CCDS (NCBI)FOXI2
Gene ExpressionFOXI2 [ NCBI-GEO ]   FOXI2 [ EBI - ARRAY_EXPRESS ]   FOXI2 [ SEEK ]   FOXI2 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXI2 [ Firebrowse - Broad ]
GenevisibleExpression of FOXI2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399823
GTEX Portal (Tissue expression)FOXI2
Human Protein AtlasENSG00000186766-FOXI2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQN5
PhosPhoSitePlusQ6ZQN5
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXI2
SuperfamilyQ6ZQN5
AlphaFold pdb e-kbQ6ZQN5   
Human Protein Atlas [tissue]ENSG00000186766-FOXI2 [tissue]
HPRD13540
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQN5
IntAct (EBI)Q6ZQN5
BioGRIDFOXI2
STRING (EMBL)FOXI2
ZODIACFOXI2
Ontologies - Pathways
QuickGOQ6ZQN5
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  cell differentiation  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  anatomical structure morphogenesis  cell differentiation  
NDEx NetworkFOXI2
Atlas of Cancer Signalling NetworkFOXI2
Wikipedia pathwaysFOXI2
Orthology - Evolution
OrthoDB399823
GeneTree (enSembl)ENSG00000186766
Phylogenetic Trees/Animal Genes : TreeFamFOXI2
Homologs : HomoloGeneFOXI2
Homology/Alignments : Family Browser (UCSC)FOXI2
Gene fusions - Rearrangements
Fusion : QuiverFOXI2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXI2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXI2
dbVarFOXI2
ClinVarFOXI2
MonarchFOXI2
1000_GenomesFOXI2 
Exome Variant ServerFOXI2
GNOMAD BrowserENSG00000186766
Varsome BrowserFOXI2
ACMGFOXI2 variants
VarityQ6ZQN5
Genomic Variants (DGV)FOXI2 [DGVbeta]
DECIPHERFOXI2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXI2 
Mutations
ICGC Data PortalFOXI2 
TCGA Data PortalFOXI2 
Broad Tumor PortalFOXI2
OASIS PortalFOXI2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXI2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFOXI2
Mutations and Diseases : HGMDFOXI2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFOXI2
DgiDB (Drug Gene Interaction Database)FOXI2
DoCM (Curated mutations)FOXI2
CIViC (Clinical Interpretations of Variants in Cancer)FOXI2
Cancer3DFOXI2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617202   
Orphanet
DisGeNETFOXI2
MedgenFOXI2
Genetic Testing Registry FOXI2
NextProtQ6ZQN5 [Medical]
GENETestsFOXI2
Target ValidationFOXI2
Huge Navigator FOXI2 [HugePedia]
ClinGenFOXI2
Clinical trials, drugs, therapy
MyCancerGenomeFOXI2
Protein Interactions : CTDFOXI2
Pharm GKB GenePA162388813
PharosQ6ZQN5
Clinical trialFOXI2
Miscellaneous
canSAR (ICR)FOXI2
HarmonizomeFOXI2
DataMed IndexFOXI2
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFOXI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:50:47 CEST 2021

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