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FOXI2 (forkhead box I2)

Identity

Alias_symbol (synonym)FLJ46831
Other alias-
HGNC (Hugo) FOXI2
LocusID (NCBI) 399823
Atlas_Id 63567
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 127737274 and ends at 127741186 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TNS3 (7p12.3) / FOXI2 (10q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXI2   32448
Cards
Entrez_Gene (NCBI)FOXI2  399823  forkhead box I2
Aliases
GeneCards (Weizmann)FOXI2
Ensembl hg19 (Hinxton)ENSG00000186766 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186766 [Gene_View]  chr10:127737274-127741186 [Contig_View]  FOXI2 [Vega]
ICGC DataPortalENSG00000186766
TCGA cBioPortalFOXI2
AceView (NCBI)FOXI2
Genatlas (Paris)FOXI2
WikiGenes399823
SOURCE (Princeton)FOXI2
Genetics Home Reference (NIH)FOXI2
Genomic and cartography
GoldenPath hg38 (UCSC)FOXI2  -     chr10:127737274-127741186 +  10q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXI2  -     10q26.2   [Description]    (hg19-Feb_2009)
EnsemblFOXI2 - 10q26.2 [CytoView hg19]  FOXI2 - 10q26.2 [CytoView hg38]
Mapping of homologs : NCBIFOXI2 [Mapview hg19]  FOXI2 [Mapview hg38]
OMIM617202   
Gene and transcription
Genbank (Entrez)AK128865 BC137296 BC137297
RefSeq transcript (Entrez)NM_207426
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXI2
Cluster EST : UnigeneHs.449674 [ NCBI ]
CGAP (NCI)Hs.449674
Alternative Splicing GalleryENSG00000186766
Gene ExpressionFOXI2 [ NCBI-GEO ]   FOXI2 [ EBI - ARRAY_EXPRESS ]   FOXI2 [ SEEK ]   FOXI2 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXI2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399823
GTEX Portal (Tissue expression)FOXI2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQN5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQN5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQN5
Splice isoforms : SwissVarQ6ZQN5
PhosPhoSitePlusQ6ZQN5
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXI2
DMDM Disease mutations399823
Blocks (Seattle)FOXI2
SuperfamilyQ6ZQN5
Human Protein AtlasENSG00000186766
Peptide AtlasQ6ZQN5
HPRD13540
IPIIPI00400893   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQN5
IntAct (EBI)Q6ZQN5
FunCoupENSG00000186766
BioGRIDFOXI2
STRING (EMBL)FOXI2
ZODIACFOXI2
Ontologies - Pathways
QuickGOQ6ZQN5
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXI2
Atlas of Cancer Signalling NetworkFOXI2
Wikipedia pathwaysFOXI2
Orthology - Evolution
OrthoDB399823
GeneTree (enSembl)ENSG00000186766
Phylogenetic Trees/Animal Genes : TreeFamFOXI2
HOVERGENQ6ZQN5
HOGENOMQ6ZQN5
Homologs : HomoloGeneFOXI2
Homology/Alignments : Family Browser (UCSC)FOXI2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXI2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXI2
dbVarFOXI2
ClinVarFOXI2
1000_GenomesFOXI2 
Exome Variant ServerFOXI2
ExAC (Exome Aggregation Consortium)FOXI2 (select the gene name)
Genetic variants : HAPMAP399823
Genomic Variants (DGV)FOXI2 [DGVbeta]
DECIPHERFOXI2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXI2 
Mutations
ICGC Data PortalFOXI2 
TCGA Data PortalFOXI2 
Broad Tumor PortalFOXI2
OASIS PortalFOXI2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXI2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXI2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXI2
DgiDB (Drug Gene Interaction Database)FOXI2
DoCM (Curated mutations)FOXI2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXI2 (select a term)
intoGenFOXI2
Cancer3DFOXI2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617202   
Orphanet
MedgenFOXI2
Genetic Testing Registry FOXI2
NextProtQ6ZQN5 [Medical]
TSGene399823
GENETestsFOXI2
Target ValidationFOXI2
Huge Navigator FOXI2 [HugePedia]
snp3D : Map Gene to Disease399823
BioCentury BCIQFOXI2
ClinGenFOXI2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399823
Chemical/Pharm GKB GenePA162388813
Clinical trialFOXI2
Miscellaneous
canSAR (ICR)FOXI2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXI2
EVEXFOXI2
GoPubMedFOXI2
iHOPFOXI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 15:49:47 CEST 2017

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