Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FOXI3 (forkhead box I3)

Identity

Other alias-
HGNC (Hugo) FOXI3
LocusID (NCBI) 344167
Atlas_Id 63568
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 88448207 and ends at 88452535 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXI3   35123
Cards
Entrez_Gene (NCBI)FOXI3  344167  forkhead box I3
Aliases
GeneCards (Weizmann)FOXI3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:88448207-88452535 [Contig_View]  FOXI3 [Vega]
TCGA cBioPortalFOXI3
AceView (NCBI)FOXI3
Genatlas (Paris)FOXI3
WikiGenes344167
SOURCE (Princeton)FOXI3
Genetics Home Reference (NIH)FOXI3
Genomic and cartography
GoldenPath hg38 (UCSC)FOXI3  -     chr2:88448207-88452535 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXI3  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblFOXI3 - 2p11.2 [CytoView hg19]  FOXI3 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIFOXI3 [Mapview hg19]  FOXI3 [Mapview hg38]
OMIM612351   
Gene and transcription
Genbank (Entrez)BN001222
RefSeq transcript (Entrez)NM_001135649
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXI3
Cluster EST : UnigeneHs.716722 [ NCBI ]
CGAP (NCI)Hs.716722
Gene ExpressionFOXI3 [ NCBI-GEO ]   FOXI3 [ EBI - ARRAY_EXPRESS ]   FOXI3 [ SEEK ]   FOXI3 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXI3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344167
GTEX Portal (Tissue expression)FOXI3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MTJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MTJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MTJ6
Splice isoforms : SwissVarA8MTJ6
PhosPhoSitePlusA8MTJ6
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXI3
DMDM Disease mutations344167
Blocks (Seattle)FOXI3
SuperfamilyA8MTJ6
Peptide AtlasA8MTJ6
IPIIPI00787337   
Protein Interaction databases
DIP (DOE-UCLA)A8MTJ6
IntAct (EBI)A8MTJ6
BioGRIDFOXI3
STRING (EMBL)FOXI3
ZODIACFOXI3
Ontologies - Pathways
QuickGOA8MTJ6
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXI3
Atlas of Cancer Signalling NetworkFOXI3
Wikipedia pathwaysFOXI3
Orthology - Evolution
OrthoDB344167
Phylogenetic Trees/Animal Genes : TreeFamFOXI3
HOVERGENA8MTJ6
HOGENOMA8MTJ6
Homologs : HomoloGeneFOXI3
Homology/Alignments : Family Browser (UCSC)FOXI3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXI3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXI3
dbVarFOXI3
ClinVarFOXI3
1000_GenomesFOXI3 
Exome Variant ServerFOXI3
ExAC (Exome Aggregation Consortium)FOXI3 (select the gene name)
Genetic variants : HAPMAP344167
Genomic Variants (DGV)FOXI3 [DGVbeta]
DECIPHERFOXI3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXI3 
Mutations
ICGC Data PortalFOXI3 
TCGA Data PortalFOXI3 
Broad Tumor PortalFOXI3
OASIS PortalFOXI3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXI3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXI3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXI3
DgiDB (Drug Gene Interaction Database)FOXI3
DoCM (Curated mutations)FOXI3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXI3 (select a term)
intoGenFOXI3
Cancer3DFOXI3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612351   
Orphanet
MedgenFOXI3
Genetic Testing Registry FOXI3
NextProtA8MTJ6 [Medical]
TSGene344167
GENETestsFOXI3
Target ValidationFOXI3
Huge Navigator FOXI3 [HugePedia]
snp3D : Map Gene to Disease344167
BioCentury BCIQFOXI3
ClinGenFOXI3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344167
Chemical/Pharm GKB GenePA164720107
Clinical trialFOXI3
Miscellaneous
canSAR (ICR)FOXI3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXI3
EVEXFOXI3
GoPubMedFOXI3
iHOPFOXI3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:49:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.