Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXJ1 (forkhead box J1)

Identity

Alias_namesFKHL13
Alias_symbol (synonym)HFH-4
HFH4
Other alias
HGNC (Hugo) FOXJ1
LocusID (NCBI) 2302
Atlas_Id 40630
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 76136334 and ends at 76141299 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EXOC7 (17q25.1) / FOXJ1 (17q25.1)EXOC7 17q25.1 / FOXJ1 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXJ1   3816
Cards
Entrez_Gene (NCBI)FOXJ1  2302  forkhead box J1
AliasesFKHL13; HFH-4; HFH4
GeneCards (Weizmann)FOXJ1
Ensembl hg19 (Hinxton)ENSG00000129654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129654 [Gene_View]  chr17:76136334-76141299 [Contig_View]  FOXJ1 [Vega]
ICGC DataPortalENSG00000129654
TCGA cBioPortalFOXJ1
AceView (NCBI)FOXJ1
Genatlas (Paris)FOXJ1
WikiGenes2302
SOURCE (Princeton)FOXJ1
Genetics Home Reference (NIH)FOXJ1
Genomic and cartography
GoldenPath hg38 (UCSC)FOXJ1  -     chr17:76136334-76141299 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXJ1  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblFOXJ1 - 17q25.1 [CytoView hg19]  FOXJ1 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIFOXJ1 [Mapview hg19]  FOXJ1 [Mapview hg38]
OMIM602291   
Gene and transcription
Genbank (Entrez)BC046460 DB458983 U69537 X99349
RefSeq transcript (Entrez)NM_001454
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXJ1
Cluster EST : UnigeneHs.651204 [ NCBI ]
CGAP (NCI)Hs.651204
Alternative Splicing GalleryENSG00000129654
Gene ExpressionFOXJ1 [ NCBI-GEO ]   FOXJ1 [ EBI - ARRAY_EXPRESS ]   FOXJ1 [ SEEK ]   FOXJ1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXJ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2302
GTEX Portal (Tissue expression)FOXJ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92949   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92949  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92949
Splice isoforms : SwissVarQ92949
PhosPhoSitePlusQ92949
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXJ1
DMDM Disease mutations2302
Blocks (Seattle)FOXJ1
SuperfamilyQ92949
Human Protein AtlasENSG00000129654
Peptide AtlasQ92949
HPRD03798
IPIIPI00024319   
Protein Interaction databases
DIP (DOE-UCLA)Q92949
IntAct (EBI)Q92949
FunCoupENSG00000129654
BioGRIDFOXJ1
STRING (EMBL)FOXJ1
ZODIACFOXJ1
Ontologies - Pathways
QuickGOQ92949
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription regulatory region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  central tolerance induction  negative regulation of germinal center formation  positive regulation of central B cell tolerance induction  negative regulation of humoral immune response mediated by circulating immunoglobulin  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  humoral immune response  spermatogenesis  determination of left/right symmetry  pattern specification process  brain development  brain development  heart development  actin cytoskeleton organization  negative regulation of NF-kappaB transcription factor activity  negative regulation of T cell differentiation in thymus  establishment of apical/basal cell polarity  metanephric part of ureteric bud development  negative regulation of T cell proliferation  motile cilium assembly  negative regulation of interleukin-6 biosynthetic process  positive regulation of transcription from RNA polymerase II promoter  negative regulation of B cell activation  leukocyte migration  cilium assembly  lung epithelium development  lung epithelium development  epithelium development  left/right pattern formation  glomerular parietal epithelial cell development  activation of GTPase activity  positive regulation of lung ciliated cell differentiation  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription regulatory region sequence-specific DNA binding  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  central tolerance induction  negative regulation of germinal center formation  positive regulation of central B cell tolerance induction  negative regulation of humoral immune response mediated by circulating immunoglobulin  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  humoral immune response  spermatogenesis  determination of left/right symmetry  pattern specification process  brain development  brain development  heart development  actin cytoskeleton organization  negative regulation of NF-kappaB transcription factor activity  negative regulation of T cell differentiation in thymus  establishment of apical/basal cell polarity  metanephric part of ureteric bud development  negative regulation of T cell proliferation  motile cilium assembly  negative regulation of interleukin-6 biosynthetic process  positive regulation of transcription from RNA polymerase II promoter  negative regulation of B cell activation  leukocyte migration  cilium assembly  lung epithelium development  lung epithelium development  epithelium development  left/right pattern formation  glomerular parietal epithelial cell development  activation of GTPase activity  positive regulation of lung ciliated cell differentiation  
NDEx NetworkFOXJ1
Atlas of Cancer Signalling NetworkFOXJ1
Wikipedia pathwaysFOXJ1
Orthology - Evolution
OrthoDB2302
GeneTree (enSembl)ENSG00000129654
Phylogenetic Trees/Animal Genes : TreeFamFOXJ1
HOVERGENQ92949
HOGENOMQ92949
Homologs : HomoloGeneFOXJ1
Homology/Alignments : Family Browser (UCSC)FOXJ1
Gene fusions - Rearrangements
Fusion : MitelmanEXOC7/FOXJ1 [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion: TCGAEXOC7 17q25.1 FOXJ1 17q25.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXJ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXJ1
dbVarFOXJ1
ClinVarFOXJ1
1000_GenomesFOXJ1 
Exome Variant ServerFOXJ1
ExAC (Exome Aggregation Consortium)FOXJ1 (select the gene name)
Genetic variants : HAPMAP2302
Genomic Variants (DGV)FOXJ1 [DGVbeta]
DECIPHERFOXJ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXJ1 
Mutations
ICGC Data PortalFOXJ1 
TCGA Data PortalFOXJ1 
Broad Tumor PortalFOXJ1
OASIS PortalFOXJ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXJ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXJ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXJ1
DgiDB (Drug Gene Interaction Database)FOXJ1
DoCM (Curated mutations)FOXJ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXJ1 (select a term)
intoGenFOXJ1
Cancer3DFOXJ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602291   
Orphanet
MedgenFOXJ1
Genetic Testing Registry FOXJ1
NextProtQ92949 [Medical]
TSGene2302
GENETestsFOXJ1
Target ValidationFOXJ1
Huge Navigator FOXJ1 [HugePedia]
snp3D : Map Gene to Disease2302
BioCentury BCIQFOXJ1
ClinGenFOXJ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2302
Chemical/Pharm GKB GenePA28233
Clinical trialFOXJ1
Miscellaneous
canSAR (ICR)FOXJ1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXJ1
EVEXFOXJ1
GoPubMedFOXJ1
iHOPFOXJ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:34:17 CEST 2017

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