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FOXJ2 (forkhead box J2)

Identity

Alias_symbol (synonym)FHX
Other alias
HGNC (Hugo) FOXJ2
LocusID (NCBI) 55810
Atlas_Id 46854
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 8032763 and ends at 8055522 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADIPOR2 (12p13.33) / FOXJ2 (12p13.31)FOXJ2 (12p13.31) / MEF2D (1q22)FOXJ2 (12p13.31) / YBX3 (12p13.2)
MEF2D (1q22) / FOXJ2 (12p13.31)ADIPOR2 12p13.33 / FOXJ2 12p13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(1;12)(q22;p13) FOXJ2/MEF2D
t(1;12)(q22;p13) MEF2D/FOXJ2


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  ADIPOR2/FOXJ2 (12p13)
TSPAN9/FOXJ2 (12p13)


External links

Nomenclature
HGNC (Hugo)FOXJ2   24818
Cards
Entrez_Gene (NCBI)FOXJ2  55810  forkhead box J2
AliasesFHX
GeneCards (Weizmann)FOXJ2
Ensembl hg19 (Hinxton)ENSG00000065970 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000065970 [Gene_View]  ENSG00000065970 [Sequence]  chr12:8032763-8055522 [Contig_View]  FOXJ2 [Vega]
ICGC DataPortalENSG00000065970
TCGA cBioPortalFOXJ2
AceView (NCBI)FOXJ2
Genatlas (Paris)FOXJ2
WikiGenes55810
SOURCE (Princeton)FOXJ2
Genetics Home Reference (NIH)FOXJ2
Genomic and cartography
GoldenPath hg38 (UCSC)FOXJ2  -     chr12:8032763-8055522 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXJ2  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblFOXJ2 - 12p13.31 [CytoView hg19]  FOXJ2 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIFOXJ2 [Mapview hg19]  FOXJ2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF038177 AF155132 AF155133 AK092529 AL161978
RefSeq transcript (Entrez)NM_018416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXJ2
Cluster EST : UnigeneHs.120844 [ NCBI ]
CGAP (NCI)Hs.120844
Alternative Splicing GalleryENSG00000065970
Gene ExpressionFOXJ2 [ NCBI-GEO ]   FOXJ2 [ EBI - ARRAY_EXPRESS ]   FOXJ2 [ SEEK ]   FOXJ2 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXJ2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55810
GTEX Portal (Tissue expression)FOXJ2
Human Protein AtlasENSG00000065970-FOXJ2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0K8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0K8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0K8
Splice isoforms : SwissVarQ9P0K8
PhosPhoSitePlusQ9P0K8
Domaine pattern : Prosite (Expaxy)FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_2    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXJ2
DMDM Disease mutations55810
Blocks (Seattle)FOXJ2
SuperfamilyQ9P0K8
Human Protein Atlas [tissue]ENSG00000065970-FOXJ2 [tissue]
Peptide AtlasQ9P0K8
HPRD17014
IPIIPI00000781   IPI00221299   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0K8
IntAct (EBI)Q9P0K8
FunCoupENSG00000065970
BioGRIDFOXJ2
STRING (EMBL)FOXJ2
ZODIACFOXJ2
Ontologies - Pathways
QuickGOQ9P0K8
Ontology : AmiGORNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific  fibrillar center  protein binding  nucleus  negative regulation of angiogenesis  identical protein binding  positive regulation of transcription by RNA polymerase II  negative regulation of blood vessel endothelial cell differentiation  positive regulation of vascular smooth muscle cell proliferation  
Ontology : EGO-EBIRNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific  fibrillar center  protein binding  nucleus  negative regulation of angiogenesis  identical protein binding  positive regulation of transcription by RNA polymerase II  negative regulation of blood vessel endothelial cell differentiation  positive regulation of vascular smooth muscle cell proliferation  
NDEx NetworkFOXJ2
Atlas of Cancer Signalling NetworkFOXJ2
Wikipedia pathwaysFOXJ2
Orthology - Evolution
OrthoDB55810
GeneTree (enSembl)ENSG00000065970
Phylogenetic Trees/Animal Genes : TreeFamFOXJ2
HOVERGENQ9P0K8
HOGENOMQ9P0K8
Homologs : HomoloGeneFOXJ2
Homology/Alignments : Family Browser (UCSC)FOXJ2
Gene fusions - Rearrangements
Fusion : MitelmanADIPOR2/FOXJ2 [12p13.33/12p13.31]  [t(12;12)(p13;p13)]  
Fusion PortalADIPOR2 12p13.33 FOXJ2 12p13.31 BRCA
Fusion : QuiverFOXJ2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXJ2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXJ2
dbVarFOXJ2
ClinVarFOXJ2
1000_GenomesFOXJ2 
Exome Variant ServerFOXJ2
ExAC (Exome Aggregation Consortium)ENSG00000065970
GNOMAD BrowserENSG00000065970
Varsome BrowserFOXJ2
Genetic variants : HAPMAP55810
Genomic Variants (DGV)FOXJ2 [DGVbeta]
DECIPHERFOXJ2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXJ2 
Mutations
ICGC Data PortalFOXJ2 
TCGA Data PortalFOXJ2 
Broad Tumor PortalFOXJ2
OASIS PortalFOXJ2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXJ2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXJ2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXJ2
DgiDB (Drug Gene Interaction Database)FOXJ2
DoCM (Curated mutations)FOXJ2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXJ2 (select a term)
intoGenFOXJ2
Cancer3DFOXJ2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFOXJ2
MedgenFOXJ2
Genetic Testing Registry FOXJ2
NextProtQ9P0K8 [Medical]
TSGene55810
GENETestsFOXJ2
Target ValidationFOXJ2
Huge Navigator FOXJ2 [HugePedia]
snp3D : Map Gene to Disease55810
BioCentury BCIQFOXJ2
ClinGenFOXJ2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55810
Chemical/Pharm GKB GenePA134982817
Clinical trialFOXJ2
Miscellaneous
canSAR (ICR)FOXJ2 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXJ2
EVEXFOXJ2
GoPubMedFOXJ2
iHOPFOXJ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:07:07 CET 2018

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