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FOXJ3 (forkhead box J3)

Identity

Alias (NCBI)-
HGNC (Hugo) FOXJ3
HGNC Alias symbKIAA1041
LocusID (NCBI) 22887
Atlas_Id 47160
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 42176548 and ends at 42335235 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C14orf37 (14q23.1) / FOXJ3 (1p34.2)CERKL (2q31.3) / FOXJ3 (1p34.2)FOXJ3 (1p34.2) / CAMTA1 (1p36.31)
FOXJ3 (1p34.2) / CLIC6 (21q22.12)FOXJ3 (1p34.2) / FOXJ3 (1p34.2)FOXJ3 (1p34.2) / NECAP1 (12p13.31)
FOXJ3 (1p34.2) / SVBP (1p34.2)FOXJ3 (1p34.2) / ZFYVE9 (1p32.3)FOXJ3 (1p34.2) / ZNF362 (1p35.1)
IMMT (2p11.2) / FOXJ3 (1p34.2)NCL (2q37.1) / FOXJ3 (1p34.2)RABGGTB (1p31.1) / FOXJ3 (1p34.2)
RBM6 (3p21.31) / FOXJ3 (1p34.2)FOXJ3 1p34.2 CCDC23FOXJ3 1p34.2 / CLIC6 21q22.12
FOXJ3 1p34.2 / ZFYVE9 1p32.3FOXJ3 1p34.2 / ZNF362 1p35.1RABGGTB 1p31.1 / FOXJ3 1p34.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;11)(p34;p13) FOXJ3/LMO2


External links

 

Nomenclature
HGNC (Hugo)FOXJ3   29178
Cards
Entrez_Gene (NCBI)FOXJ3    forkhead box J3
Aliases
GeneCards (Weizmann)FOXJ3
Ensembl hg19 (Hinxton)ENSG00000198815 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198815 [Gene_View]  ENSG00000198815 [Sequence]  chr1:42176548-42335235 [Contig_View]  FOXJ3 [Vega]
ICGC DataPortalENSG00000198815
TCGA cBioPortalFOXJ3
AceView (NCBI)FOXJ3
Genatlas (Paris)FOXJ3
SOURCE (Princeton)FOXJ3
Genetics Home Reference (NIH)FOXJ3
Genomic and cartography
GoldenPath hg38 (UCSC)FOXJ3  -     chr1:42176548-42335235 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXJ3  -     1p34.2   [Description]    (hg19-Feb_2009)
GoldenPathFOXJ3 - 1p34.2 [CytoView hg19]  FOXJ3 - 1p34.2 [CytoView hg38]
ImmunoBaseENSG00000198815
Genome Data Viewer NCBIFOXJ3 [Mapview hg19]  
OMIM616035   
Gene and transcription
Genbank (Entrez)AB028964 AK027075 AK128307 AL157422 BC014182
RefSeq transcript (Entrez)NM_001198850 NM_001198851 NM_001198852 NM_014947
Consensus coding sequences : CCDS (NCBI)FOXJ3
Gene ExpressionFOXJ3 [ NCBI-GEO ]   FOXJ3 [ EBI - ARRAY_EXPRESS ]   FOXJ3 [ SEEK ]   FOXJ3 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXJ3 [ Firebrowse - Broad ]
GenevisibleExpression of FOXJ3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22887
GTEX Portal (Tissue expression)FOXJ3
Human Protein AtlasENSG00000198815-FOXJ3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPW0
PhosPhoSitePlusQ9UPW0
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXJ3
SuperfamilyQ9UPW0
AlphaFold pdb e-kbQ9UPW0   
Human Protein Atlas [tissue]ENSG00000198815-FOXJ3 [tissue]
HPRD13549
Protein Interaction databases
DIP (DOE-UCLA)Q9UPW0
IntAct (EBI)Q9UPW0
BioGRIDFOXJ3
STRING (EMBL)FOXJ3
ZODIACFOXJ3
Ontologies - Pathways
QuickGOQ9UPW0
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  male meiosis I  spermatogenesis  cell differentiation  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  male meiosis I  spermatogenesis  cell differentiation  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  sequence-specific double-stranded DNA binding  
NDEx NetworkFOXJ3
Atlas of Cancer Signalling NetworkFOXJ3
Wikipedia pathwaysFOXJ3
Orthology - Evolution
OrthoDB22887
GeneTree (enSembl)ENSG00000198815
Phylogenetic Trees/Animal Genes : TreeFamFOXJ3
Homologs : HomoloGeneFOXJ3
Homology/Alignments : Family Browser (UCSC)FOXJ3
Gene fusions - Rearrangements
Fusion : MitelmanFOXJ3/CAMTA1 [1p34.2/1p36.31]  
Fusion : MitelmanFOXJ3/CCDC23 [1p34.2/t(1;1)(p34;p34)]  
Fusion : MitelmanFOXJ3/CLIC6 [1p34.2/21q22.12]  
Fusion : MitelmanFOXJ3/ZFYVE9 [1p34.2/1p32.3]  
Fusion : MitelmanFOXJ3/ZNF362 [1p34.2/1p35.1]  
Fusion : MitelmanRABGGTB/FOXJ3 [1p31.1/1p34.2]  
Fusion : QuiverFOXJ3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXJ3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXJ3
dbVarFOXJ3
ClinVarFOXJ3
MonarchFOXJ3
1000_GenomesFOXJ3 
Exome Variant ServerFOXJ3
GNOMAD BrowserENSG00000198815
Varsome BrowserFOXJ3
ACMGFOXJ3 variants
VarityQ9UPW0
Genomic Variants (DGV)FOXJ3 [DGVbeta]
DECIPHERFOXJ3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXJ3 
Mutations
ICGC Data PortalFOXJ3 
TCGA Data PortalFOXJ3 
Broad Tumor PortalFOXJ3
OASIS PortalFOXJ3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXJ3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFOXJ3
Mutations and Diseases : HGMDFOXJ3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFOXJ3
DgiDB (Drug Gene Interaction Database)FOXJ3
DoCM (Curated mutations)FOXJ3
CIViC (Clinical Interpretations of Variants in Cancer)FOXJ3
Cancer3DFOXJ3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616035   
Orphanet
DisGeNETFOXJ3
MedgenFOXJ3
Genetic Testing Registry FOXJ3
NextProtQ9UPW0 [Medical]
GENETestsFOXJ3
Target ValidationFOXJ3
Huge Navigator FOXJ3 [HugePedia]
ClinGenFOXJ3
Clinical trials, drugs, therapy
MyCancerGenomeFOXJ3
Protein Interactions : CTDFOXJ3
Pharm GKB GenePA134945417
PharosQ9UPW0
Clinical trialFOXJ3
Miscellaneous
canSAR (ICR)FOXJ3
HarmonizomeFOXJ3
DataMed IndexFOXJ3
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFOXJ3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:09:51 CEST 2021

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