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FOXJ3 (forkhead box J3)

Identity

Alias_symbol (synonym)KIAA1041
Other alias-
HGNC (Hugo) FOXJ3
LocusID (NCBI) 22887
Atlas_Id 47160
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 42176539 and ends at 42335877 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C14orf37 (14q23.1) / FOXJ3 (1p34.2)CERKL (2q31.3) / FOXJ3 (1p34.2)FOXJ3 (1p34.2) / CAMTA1 (1p36.31)
FOXJ3 (1p34.2) / CLIC6 (21q22.12)FOXJ3 (1p34.2) / FOXJ3 (1p34.2)FOXJ3 (1p34.2) / NECAP1 (12p13.31)
FOXJ3 (1p34.2) / SVBP (1p34.2)FOXJ3 (1p34.2) / ZFYVE9 (1p32.3)FOXJ3 (1p34.2) / ZNF362 (1p35.1)
IMMT (2p11.2) / FOXJ3 (1p34.2)NCL (2q37.1) / FOXJ3 (1p34.2)RABGGTB (1p31.1) / FOXJ3 (1p34.2)
RBM6 (3p21.31) / FOXJ3 (1p34.2)FOXJ3 1p34.2 CCDC23FOXJ3 1p34.2 / CLIC6 21q22.12
FOXJ3 1p34.2 / ZFYVE9 1p32.3FOXJ3 1p34.2 / ZNF362 1p35.1RABGGTB 1p31.1 / FOXJ3 1p34.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXJ3   29178
Cards
Entrez_Gene (NCBI)FOXJ3  22887  forkhead box J3
Aliases
GeneCards (Weizmann)FOXJ3
Ensembl hg19 (Hinxton)ENSG00000198815 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198815 [Gene_View]  chr1:42176539-42335877 [Contig_View]  FOXJ3 [Vega]
ICGC DataPortalENSG00000198815
TCGA cBioPortalFOXJ3
AceView (NCBI)FOXJ3
Genatlas (Paris)FOXJ3
WikiGenes22887
SOURCE (Princeton)FOXJ3
Genetics Home Reference (NIH)FOXJ3
Genomic and cartography
GoldenPath hg38 (UCSC)FOXJ3  -     chr1:42176539-42335877 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXJ3  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblFOXJ3 - 1p34.2 [CytoView hg19]  FOXJ3 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIFOXJ3 [Mapview hg19]  FOXJ3 [Mapview hg38]
OMIM616035   
Gene and transcription
Genbank (Entrez)AB028964 AK027075 AK128307 AL157422 BC014182
RefSeq transcript (Entrez)NM_001198850 NM_001198851 NM_001198852 NM_014947
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXJ3
Cluster EST : UnigeneHs.26023 [ NCBI ]
CGAP (NCI)Hs.26023
Alternative Splicing GalleryENSG00000198815
Gene ExpressionFOXJ3 [ NCBI-GEO ]   FOXJ3 [ EBI - ARRAY_EXPRESS ]   FOXJ3 [ SEEK ]   FOXJ3 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXJ3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22887
GTEX Portal (Tissue expression)FOXJ3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPW0
Splice isoforms : SwissVarQ9UPW0
PhosPhoSitePlusQ9UPW0
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXJ3
DMDM Disease mutations22887
Blocks (Seattle)FOXJ3
SuperfamilyQ9UPW0
Human Protein AtlasENSG00000198815
Peptide AtlasQ9UPW0
HPRD13549
IPIIPI00010426   IPI00414683   IPI00644927   IPI00645455   IPI00646333   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPW0
IntAct (EBI)Q9UPW0
FunCoupENSG00000198815
BioGRIDFOXJ3
STRING (EMBL)FOXJ3
ZODIACFOXJ3
Ontologies - Pathways
QuickGOQ9UPW0
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXJ3
Atlas of Cancer Signalling NetworkFOXJ3
Wikipedia pathwaysFOXJ3
Orthology - Evolution
OrthoDB22887
GeneTree (enSembl)ENSG00000198815
Phylogenetic Trees/Animal Genes : TreeFamFOXJ3
HOVERGENQ9UPW0
HOGENOMQ9UPW0
Homologs : HomoloGeneFOXJ3
Homology/Alignments : Family Browser (UCSC)FOXJ3
Gene fusions - Rearrangements
Fusion : MitelmanFOXJ3/CAMTA1 [1p34.2/1p36.31]  
Fusion : MitelmanFOXJ3/CCDC23 [1p34.2/t(1;1)(p34;p34)]  
Fusion : MitelmanFOXJ3/CLIC6 [1p34.2/21q22.12]  [t(1;21)(p34;q22)]  
Fusion : MitelmanFOXJ3/ZFYVE9 [1p34.2/1p32.3]  [t(1;1)(p32;p34)]  
Fusion : MitelmanFOXJ3/ZNF362 [1p34.2/1p35.1]  [t(1;1)(p34;p35)]  
Fusion : MitelmanRABGGTB/FOXJ3 [1p31.1/1p34.2]  [t(1;1)(p31;p34)]  
Fusion: TCGAFOXJ3 1p34.2 CCDC23 OV
Fusion: TCGAFOXJ3 1p34.2 CLIC6 21q22.12 LUAD
Fusion: TCGAFOXJ3 1p34.2 ZFYVE9 1p32.3 BRCA
Fusion: TCGAFOXJ3 1p34.2 ZNF362 1p35.1 BRCA
Fusion: TCGARABGGTB 1p31.1 FOXJ3 1p34.2 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXJ3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXJ3
dbVarFOXJ3
ClinVarFOXJ3
1000_GenomesFOXJ3 
Exome Variant ServerFOXJ3
ExAC (Exome Aggregation Consortium)FOXJ3 (select the gene name)
Genetic variants : HAPMAP22887
Genomic Variants (DGV)FOXJ3 [DGVbeta]
DECIPHERFOXJ3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXJ3 
Mutations
ICGC Data PortalFOXJ3 
TCGA Data PortalFOXJ3 
Broad Tumor PortalFOXJ3
OASIS PortalFOXJ3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXJ3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXJ3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXJ3
DgiDB (Drug Gene Interaction Database)FOXJ3
DoCM (Curated mutations)FOXJ3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXJ3 (select a term)
intoGenFOXJ3
Cancer3DFOXJ3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616035   
Orphanet
MedgenFOXJ3
Genetic Testing Registry FOXJ3
NextProtQ9UPW0 [Medical]
TSGene22887
GENETestsFOXJ3
Target ValidationFOXJ3
Huge Navigator FOXJ3 [HugePedia]
snp3D : Map Gene to Disease22887
BioCentury BCIQFOXJ3
ClinGenFOXJ3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22887
Chemical/Pharm GKB GenePA134945417
Clinical trialFOXJ3
Miscellaneous
canSAR (ICR)FOXJ3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXJ3
EVEXFOXJ3
GoPubMedFOXJ3
iHOPFOXJ3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:08:52 CEST 2017

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