Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXL1 (forkhead box L1)

Identity

Alias_namesFKHL11
Alias_symbol (synonym)FREAC7
FKH6
Other alias
HGNC (Hugo) FOXL1
LocusID (NCBI) 2300
Atlas_Id 47339
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 86578509 and ends at 86581698 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXL1   3817
Cards
Entrez_Gene (NCBI)FOXL1  2300  forkhead box L1
AliasesFKH6; FKHL11; FREAC7
GeneCards (Weizmann)FOXL1
Ensembl hg19 (Hinxton)ENSG00000176678 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176678 [Gene_View]  chr16:86578509-86581698 [Contig_View]  FOXL1 [Vega]
ICGC DataPortalENSG00000176678
TCGA cBioPortalFOXL1
AceView (NCBI)FOXL1
Genatlas (Paris)FOXL1
WikiGenes2300
SOURCE (Princeton)FOXL1
Genetics Home Reference (NIH)FOXL1
Genomic and cartography
GoldenPath hg38 (UCSC)FOXL1  -     chr16:86578509-86581698 +  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXL1  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblFOXL1 - 16q24.1 [CytoView hg19]  FOXL1 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBIFOXL1 [Mapview hg19]  FOXL1 [Mapview hg38]
OMIM603252   
Gene and transcription
Genbank (Entrez)BC100027 BC117226 BM675371
RefSeq transcript (Entrez)NM_005250
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXL1
Cluster EST : UnigeneHs.533830 [ NCBI ]
CGAP (NCI)Hs.533830
Alternative Splicing GalleryENSG00000176678
Gene ExpressionFOXL1 [ NCBI-GEO ]   FOXL1 [ EBI - ARRAY_EXPRESS ]   FOXL1 [ SEEK ]   FOXL1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2300
GTEX Portal (Tissue expression)FOXL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12952   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12952  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12952
Splice isoforms : SwissVarQ12952
PhosPhoSitePlusQ12952
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXL1
DMDM Disease mutations2300
Blocks (Seattle)FOXL1
SuperfamilyQ12952
Human Protein AtlasENSG00000176678
Peptide AtlasQ12952
HPRD07219
IPIIPI00030343   
Protein Interaction databases
DIP (DOE-UCLA)Q12952
IntAct (EBI)Q12952
FunCoupENSG00000176678
BioGRIDFOXL1
STRING (EMBL)FOXL1
ZODIACFOXL1
Ontologies - Pathways
QuickGOQ12952
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  multicellular organism development  visceral mesoderm-endoderm interaction involved in midgut development  heart development  DNA binding, bending  animal organ morphogenesis  regulation of Wnt signaling pathway  proteoglycan biosynthetic process  sequence-specific DNA binding  Peyer's patch morphogenesis  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  multicellular organism development  visceral mesoderm-endoderm interaction involved in midgut development  heart development  DNA binding, bending  animal organ morphogenesis  regulation of Wnt signaling pathway  proteoglycan biosynthetic process  sequence-specific DNA binding  Peyer's patch morphogenesis  
NDEx NetworkFOXL1
Atlas of Cancer Signalling NetworkFOXL1
Wikipedia pathwaysFOXL1
Orthology - Evolution
OrthoDB2300
GeneTree (enSembl)ENSG00000176678
Phylogenetic Trees/Animal Genes : TreeFamFOXL1
HOVERGENQ12952
HOGENOMQ12952
Homologs : HomoloGeneFOXL1
Homology/Alignments : Family Browser (UCSC)FOXL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXL1
dbVarFOXL1
ClinVarFOXL1
1000_GenomesFOXL1 
Exome Variant ServerFOXL1
ExAC (Exome Aggregation Consortium)FOXL1 (select the gene name)
Genetic variants : HAPMAP2300
Genomic Variants (DGV)FOXL1 [DGVbeta]
DECIPHERFOXL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXL1 
Mutations
ICGC Data PortalFOXL1 
TCGA Data PortalFOXL1 
Broad Tumor PortalFOXL1
OASIS PortalFOXL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch FOXL1
DgiDB (Drug Gene Interaction Database)FOXL1
DoCM (Curated mutations)FOXL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXL1 (select a term)
intoGenFOXL1
Cancer3DFOXL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603252   
Orphanet
MedgenFOXL1
Genetic Testing Registry FOXL1
NextProtQ12952 [Medical]
TSGene2300
GENETestsFOXL1
Target ValidationFOXL1
Huge Navigator FOXL1 [HugePedia]
snp3D : Map Gene to Disease2300
BioCentury BCIQFOXL1
ClinGenFOXL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2300
Chemical/Pharm GKB GenePA28234
Clinical trialFOXL1
Miscellaneous
canSAR (ICR)FOXL1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXL1
EVEXFOXL1
GoPubMedFOXL1
iHOPFOXL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:18 CEST 2017

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