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FOXL2NB (FOXL2 neighbor)

Identity

Alias_namesC3orf72
chromosome 3 open reading frame 72
Alias_symbol (synonym)FLJ43329
Other alias
HGNC (Hugo) FOXL2NB
LocusID (NCBI) 401089
Atlas_Id 63570
Location 3q22.3  [Link to chromosome band 3q22]
Location_base_pair Starts at 138947234 and ends at 138953988 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXL2NB   34428
Cards
Entrez_Gene (NCBI)FOXL2NB  401089  FOXL2 neighbor
AliasesC3orf72
GeneCards (Weizmann)FOXL2NB
Ensembl hg19 (Hinxton)ENSG00000206262 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206262 [Gene_View]  chr3:138947234-138953988 [Contig_View]  FOXL2NB [Vega]
ICGC DataPortalENSG00000206262
TCGA cBioPortalFOXL2NB
AceView (NCBI)FOXL2NB
Genatlas (Paris)FOXL2NB
WikiGenes401089
SOURCE (Princeton)FOXL2NB
Genetics Home Reference (NIH)FOXL2NB
Genomic and cartography
GoldenPath hg38 (UCSC)FOXL2NB  -     chr3:138947234-138953988 +  3q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXL2NB  -     3q22.3   [Description]    (hg19-Feb_2009)
EnsemblFOXL2NB - 3q22.3 [CytoView hg19]  FOXL2NB - 3q22.3 [CytoView hg38]
Mapping of homologs : NCBIFOXL2NB [Mapview hg19]  FOXL2NB [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125319 AK304483
RefSeq transcript (Entrez)NM_001040061
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXL2NB
Cluster EST : UnigeneHs.591303 [ NCBI ]
CGAP (NCI)Hs.591303
Alternative Splicing GalleryENSG00000206262
Gene ExpressionFOXL2NB [ NCBI-GEO ]   FOXL2NB [ EBI - ARRAY_EXPRESS ]   FOXL2NB [ SEEK ]   FOXL2NB [ MEM ]
Gene Expression Viewer (FireBrowse)FOXL2NB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401089
GTEX Portal (Tissue expression)FOXL2NB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUU3
Splice isoforms : SwissVarQ6ZUU3
PhosPhoSitePlusQ6ZUU3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FOXL2NB
DMDM Disease mutations401089
Blocks (Seattle)FOXL2NB
SuperfamilyQ6ZUU3
Human Protein AtlasENSG00000206262
Peptide AtlasQ6ZUU3
IPIIPI00783226   IPI00946743   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUU3
IntAct (EBI)Q6ZUU3
FunCoupENSG00000206262
BioGRIDFOXL2NB
STRING (EMBL)FOXL2NB
ZODIACFOXL2NB
Ontologies - Pathways
QuickGOQ6ZUU3
Ontology : AmiGOfibrillar center  
Ontology : EGO-EBIfibrillar center  
NDEx NetworkFOXL2NB
Atlas of Cancer Signalling NetworkFOXL2NB
Wikipedia pathwaysFOXL2NB
Orthology - Evolution
OrthoDB401089
GeneTree (enSembl)ENSG00000206262
Phylogenetic Trees/Animal Genes : TreeFamFOXL2NB
HOVERGENQ6ZUU3
HOGENOMQ6ZUU3
Homologs : HomoloGeneFOXL2NB
Homology/Alignments : Family Browser (UCSC)FOXL2NB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXL2NB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXL2NB
dbVarFOXL2NB
ClinVarFOXL2NB
1000_GenomesFOXL2NB 
Exome Variant ServerFOXL2NB
ExAC (Exome Aggregation Consortium)FOXL2NB (select the gene name)
Genetic variants : HAPMAP401089
Genomic Variants (DGV)FOXL2NB [DGVbeta]
DECIPHERFOXL2NB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXL2NB 
Mutations
ICGC Data PortalFOXL2NB 
TCGA Data PortalFOXL2NB 
Broad Tumor PortalFOXL2NB
OASIS PortalFOXL2NB [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFOXL2NB
BioMutasearch FOXL2NB
DgiDB (Drug Gene Interaction Database)FOXL2NB
DoCM (Curated mutations)FOXL2NB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXL2NB (select a term)
intoGenFOXL2NB
Cancer3DFOXL2NB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFOXL2NB
Genetic Testing Registry FOXL2NB
NextProtQ6ZUU3 [Medical]
TSGene401089
GENETestsFOXL2NB
Target ValidationFOXL2NB
Huge Navigator FOXL2NB [HugePedia]
snp3D : Map Gene to Disease401089
BioCentury BCIQFOXL2NB
ClinGenFOXL2NB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401089
Chemical/Pharm GKB GenePA162379723
Clinical trialFOXL2NB
Miscellaneous
canSAR (ICR)FOXL2NB (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXL2NB
EVEXFOXL2NB
GoPubMedFOXL2NB
iHOPFOXL2NB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:52 CEST 2017

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