Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FOXN2 (forkhead box N2)

Identity

Other namesHTLF
HGNC (Hugo) FOXN2
LocusID (NCBI) 3344
Location 2p16.3
Location_base_pair Starts at 48541795 and ends at 48606434 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FOXN2   5281
Entrez_Gene (NCBI)FOXN2  3344  forkhead box N2
Cards
GeneCards (Weizmann)FOXN2
Ensembl (Hinxton)ENSG00000170802 [Gene_View]  chr2:48541795-48606434 [Contig_View]  FOXN2 [Vega]
AceView (NCBI)FOXN2
Genatlas (Paris)FOXN2
SOURCE (Stanford)NM_002158
Genomic and cartography
GoldenPath (UCSC)FOXN2  -  2p16.3   chr2:48541795-48606434 +  2p16.3   [Description]    (hg19-Feb_2009)
EnsemblFOXN2 - 2p16.3 [CytoView]
Mapping of homologs : NCBIFOXN2 [Mapview]
OMIM143089   
Gene and transcription
Genbank (Entrez)AA827684 AK123200 BC063305 BC069731 BQ025120
RefSeq transcript (SRS)NM_002158
RefSeq transcript (Entrez)NM_002158
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NT_022184 NW_001838769 NW_004078005
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_022184 NW_001838769 NW_004078005
Consensus coding sequences : CCDS (NCBI)FOXN2
Cluster EST : UnigeneHs.468478 [ SRS ] Hs.468478 [ NCBI ]
CGAP (NCI)Hs.468478
Alternative Splicing : Fast-db (Paris)GSHG0016458
Alternative Splicing GalleryENSG00000170802
Gene ExpressionFOXN2 [ NCBI-GEO ]   FOXN2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32314 (SRS) P32314 (Uniprot)
NextProtP32314
With graphics : InterProP32314
Splice isoforms : SwissVarP32314(Swissvar)
Domaine pattern : Prosite (SRS)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (SRS)TF_fork_head    TF_fork_head_CS    WHTH_DNA-bd_dom   
Domains : Interpro (EBI)TF_fork_head    TF_fork_head_CS    WHTH_DNA-bd_dom   
Related proteins : CluSTrP32314
Domain families : Pfam (SRS)Fork_head (PF00250)   
Domain families : Pfam (Sanger)Fork_head (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
DMDM3344
Blocks (Seattle)P32314
Human Protein AtlasENSG00000170802
HPRD00882
IPIIPI00027968   IPI00413146   IPI00927950   IPI00894534   
Protein Interaction databases
DIP (DOE-UCLA)P32314
IntAct (EBI)P32314
FunCoupENSG00000170802
REACTOMEFOXN2
Protein Interaction Database3344
BioGRIDFOXN2
InParanoidP32314
Interologous Interaction database P32314
IntegromeDBFOXN2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FOXN2
SNP (GeneSNP Utah)FOXN2
SNP : HGBaseFOXN2
Genetic variants : HAPMAPFOXN2
Somatic Mutations in Cancer : COSMICFOXN2 
CONAN: Copy Number AnalysisFOXN2 
Mutations and Diseases : HGMDFOXN2
OMIM143089   
GENETests143089   
Disease Genetic AssociationFOXN2
Huge Navigator FOXN2 [HugePedia]  FOXN2 [HugeCancerGEM]
Genomic VariantsFOXN2  FOXN2 [DGVbeta]
ClinVarFOXN2
snp3D : Map Gene to Disease3344
General knowledge
Homologs : HomoloGeneFOXN2
Homology/Alignments : Family Browser (UCSC)FOXN2
Phylogenetic Trees/Animal Genes : TreeFamFOXN2
Chemical/Protein Interactions : CTD3344
Chemical/Pharm GKB GenePA162388822
Clinical trialFOXN2
Cancer Resource (Charite)ENSG00000170802
Ontology : AmiGOdouble-stranded DNA binding  sequence-specific DNA binding transcription factor activity  RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity  nucleus  transcription factor complex  pattern specification process  transcription factor binding  DNA binding, bending  embryo development  tissue development  intracellular membrane-bounded organelle  sequence-specific DNA binding  regulation of sequence-specific DNA binding transcription factor activity  
Ontology : EGO-EBIdouble-stranded DNA binding  sequence-specific DNA binding transcription factor activity  RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity  nucleus  transcription factor complex  pattern specification process  transcription factor binding  DNA binding, bending  embryo development  tissue development  intracellular membrane-bounded organelle  sequence-specific DNA binding  regulation of sequence-specific DNA binding transcription factor activity  
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
PubGeneFOXN2
iHOPFOXN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:39:06 CEST 2013
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