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FOXN4 (forkhead box N4)

Identity

Other alias-
HGNC (Hugo) FOXN4
LocusID (NCBI) 121643
Atlas_Id 47265
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 109277978 and ends at 109309220 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXN4   21399
Cards
Entrez_Gene (NCBI)FOXN4  121643  forkhead box N4
Aliases
GeneCards (Weizmann)FOXN4
Ensembl hg19 (Hinxton)ENSG00000139445 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139445 [Gene_View]  chr12:109277978-109309220 [Contig_View]  FOXN4 [Vega]
ICGC DataPortalENSG00000139445
TCGA cBioPortalFOXN4
AceView (NCBI)FOXN4
Genatlas (Paris)FOXN4
WikiGenes121643
SOURCE (Princeton)FOXN4
Genetics Home Reference (NIH)FOXN4
Genomic and cartography
GoldenPath hg38 (UCSC)FOXN4  -     chr12:109277978-109309220 -  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXN4  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblFOXN4 - 12q24.11 [CytoView hg19]  FOXN4 - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIFOXN4 [Mapview hg19]  FOXN4 [Mapview hg38]
OMIM609429   
Gene and transcription
Genbank (Entrez)AA421288 AF425596 AF425597 AK093286 AK131519
RefSeq transcript (Entrez)NM_213596
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXN4
Cluster EST : UnigeneHs.528316 [ NCBI ]
CGAP (NCI)Hs.528316
Alternative Splicing GalleryENSG00000139445
Gene ExpressionFOXN4 [ NCBI-GEO ]   FOXN4 [ EBI - ARRAY_EXPRESS ]   FOXN4 [ SEEK ]   FOXN4 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121643
GTEX Portal (Tissue expression)FOXN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NZ1
Splice isoforms : SwissVarQ96NZ1
PhosPhoSitePlusQ96NZ1
Domaine pattern : Prosite (Expaxy)FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXN4
DMDM Disease mutations121643
Blocks (Seattle)FOXN4
SuperfamilyQ96NZ1
Human Protein AtlasENSG00000139445
Peptide AtlasQ96NZ1
HPRD13550
IPIIPI00377176   IPI00289457   IPI00844123   IPI00916231   
Protein Interaction databases
DIP (DOE-UCLA)Q96NZ1
IntAct (EBI)Q96NZ1
FunCoupENSG00000139445
BioGRIDFOXN4
STRING (EMBL)FOXN4
ZODIACFOXN4
Ontologies - Pathways
QuickGOQ96NZ1
Ontology : AmiGOenhancer sequence-specific DNA binding  enhancer sequence-specific DNA binding  heart looping  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of heart contraction  retina layer formation  cell differentiation  amacrine cell differentiation  atrioventricular canal development  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  ventral spinal cord interneuron fate commitment  
Ontology : EGO-EBIenhancer sequence-specific DNA binding  enhancer sequence-specific DNA binding  heart looping  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of heart contraction  retina layer formation  cell differentiation  amacrine cell differentiation  atrioventricular canal development  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  ventral spinal cord interneuron fate commitment  
NDEx NetworkFOXN4
Atlas of Cancer Signalling NetworkFOXN4
Wikipedia pathwaysFOXN4
Orthology - Evolution
OrthoDB121643
GeneTree (enSembl)ENSG00000139445
Phylogenetic Trees/Animal Genes : TreeFamFOXN4
HOVERGENQ96NZ1
HOGENOMQ96NZ1
Homologs : HomoloGeneFOXN4
Homology/Alignments : Family Browser (UCSC)FOXN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXN4
dbVarFOXN4
ClinVarFOXN4
1000_GenomesFOXN4 
Exome Variant ServerFOXN4
ExAC (Exome Aggregation Consortium)FOXN4 (select the gene name)
Genetic variants : HAPMAP121643
Genomic Variants (DGV)FOXN4 [DGVbeta]
DECIPHERFOXN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXN4 
Mutations
ICGC Data PortalFOXN4 
TCGA Data PortalFOXN4 
Broad Tumor PortalFOXN4
OASIS PortalFOXN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXN4
DgiDB (Drug Gene Interaction Database)FOXN4
DoCM (Curated mutations)FOXN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXN4 (select a term)
intoGenFOXN4
Cancer3DFOXN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609429   
Orphanet
MedgenFOXN4
Genetic Testing Registry FOXN4
NextProtQ96NZ1 [Medical]
TSGene121643
GENETestsFOXN4
Target ValidationFOXN4
Huge Navigator FOXN4 [HugePedia]
snp3D : Map Gene to Disease121643
BioCentury BCIQFOXN4
ClinGenFOXN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121643
Chemical/Pharm GKB GenePA134982965
Clinical trialFOXN4
Miscellaneous
canSAR (ICR)FOXN4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXN4
EVEXFOXN4
GoPubMedFOXN4
iHOPFOXN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:34:19 CEST 2017

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