Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXP1-AS1 (FOXP1 antisense RNA 1)

Identity

Alias_namesFOXP1 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) FOXP1-AS1
LocusID (NCBI) 104502416
Atlas_Id 76798
Location 3p13  [Link to chromosome band 3p13]
Location_base_pair Starts at 71289758 and ends at 71305854 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXP1-AS1   41942
Cards
Entrez_Gene (NCBI)FOXP1-AS1  104502416  FOXP1 antisense RNA 1
Aliases
GeneCards (Weizmann)FOXP1-AS1
Ensembl hg19 (Hinxton)ENSG00000244203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244203 [Gene_View]  chr3:71289758-71305854 [Contig_View]  FOXP1-AS1 [Vega]
ICGC DataPortalENSG00000244203
TCGA cBioPortalFOXP1-AS1
AceView (NCBI)FOXP1-AS1
Genatlas (Paris)FOXP1-AS1
WikiGenes104502416
SOURCE (Princeton)FOXP1-AS1
Genetics Home Reference (NIH)FOXP1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)FOXP1-AS1  -     chr3:71289758-71305854 +  3p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXP1-AS1  -     3p13   [Description]    (hg19-Feb_2009)
EnsemblFOXP1-AS1 - 3p13 [CytoView hg19]  FOXP1-AS1 - 3p13 [CytoView hg38]
Mapping of homologs : NCBIFOXP1-AS1 [Mapview hg19]  FOXP1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA399395 BC040624 DB022002
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXP1-AS1
Cluster EST : UnigeneHs.658538 [ NCBI ]
CGAP (NCI)Hs.658538
Alternative Splicing GalleryENSG00000244203
Gene ExpressionFOXP1-AS1 [ NCBI-GEO ]   FOXP1-AS1 [ EBI - ARRAY_EXPRESS ]   FOXP1-AS1 [ SEEK ]   FOXP1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXP1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104502416
GTEX Portal (Tissue expression)FOXP1-AS1
Human Protein AtlasENSG00000244203-FOXP1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FOXP1-AS1
DMDM Disease mutations104502416
Blocks (Seattle)FOXP1-AS1
Human Protein Atlas [tissue]ENSG00000244203-FOXP1-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000244203
BioGRIDFOXP1-AS1
STRING (EMBL)FOXP1-AS1
ZODIACFOXP1-AS1
Ontologies - Pathways
Huge Navigator FOXP1-AS1 [HugePedia]
snp3D : Map Gene to Disease104502416
BioCentury BCIQFOXP1-AS1
ClinGenFOXP1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104502416
Clinical trialFOXP1-AS1
Miscellaneous
canSAR (ICR)FOXP1-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXP1-AS1
EVEXFOXP1-AS1
GoPubMedFOXP1-AS1
iHOPFOXP1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:07:30 CET 2017

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