Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXP2 (forkhead box P2)

Identity

Alias (NCBI)CAGH44
SPCH1
TNRC10
HGNC (Hugo) FOXP2
HGNC Alias symbCAGH44
HGNC Alias nametrinucleotide repeat containing 10
 forkhead/winged-helix transcription factor
 speech and language disorder 1
 CAG repeat protein 44
HGNC Previous nameTNRC10
 SPCH1
LocusID (NCBI) 93986
Atlas_Id 40633
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 114414997 and ends at 114693772 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COG5 (7q22.3) / FOXP2 (7q31.1)FOXP2 (7q31.1) / FOXP2 (7q31.1)FOXP2 (7q31.1) / RFC3 (13q13.2)
FOXP2 (7q31.1) / RPL36 (19p13.3)SFTPB (2p11.2) / FOXP2 (7q31.1)COG5 7q22.3 / FOXP2 7q31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(3;9)(p13;q34.1) FOXP1/ABL1


External links

Nomenclature
HGNC (Hugo)FOXP2   13875
Cards
Entrez_Gene (NCBI)FOXP2    forkhead box P2
AliasesCAGH44; SPCH1; TNRC10
GeneCards (Weizmann)FOXP2
Ensembl hg19 (Hinxton)ENSG00000128573 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128573 [Gene_View]  ENSG00000128573 [Sequence]  chr7:114414997-114693772 [Contig_View]  FOXP2 [Vega]
ICGC DataPortalENSG00000128573
TCGA cBioPortalFOXP2
AceView (NCBI)FOXP2
Genatlas (Paris)FOXP2
SOURCE (Princeton)FOXP2
Genetics Home Reference (NIH)FOXP2
Genomic and cartography
GoldenPath hg38 (UCSC)FOXP2  -     chr7:114414997-114693772 +  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXP2  -     7q31.1   [Description]    (hg19-Feb_2009)
GoldenPathFOXP2 - 7q31.1 [CytoView hg19]  FOXP2 - 7q31.1 [CytoView hg38]
ImmunoBaseENSG00000128573
genome Data Viewer NCBIFOXP2 [Mapview hg19]  
OMIM602081   605317   
Gene and transcription
Genbank (Entrez)AF086040 AF337817 AF454830 AF467252 AF467253
RefSeq transcript (Entrez)NM_001172766 NM_001172767 NM_014491 NM_148898 NM_148899 NM_148900
Consensus coding sequences : CCDS (NCBI)FOXP2
Alternative Splicing GalleryENSG00000128573
Gene ExpressionFOXP2 [ NCBI-GEO ]   FOXP2 [ EBI - ARRAY_EXPRESS ]   FOXP2 [ SEEK ]   FOXP2 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXP2 [ Firebrowse - Broad ]
GenevisibleExpression of FOXP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93986
GTEX Portal (Tissue expression)FOXP2
Human Protein AtlasENSG00000128573-FOXP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FOXP2
Human Protein Atlas [tissue]ENSG00000128573-FOXP2 [tissue]
HPRD05611
Protein Interaction databases
BioGRIDFOXP2
STRING (EMBL)FOXP2
ZODIACFOXP2
Ontologies - Pathways
Litterature
PubMed157 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFOXP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Sep 15 22:14:29 CEST 2021

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