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FOXR1 (forkhead box R1)

Identity

Alias_symbol (synonym)DLNB13
FOXN5
Other alias
HGNC (Hugo) FOXR1
LocusID (NCBI) 283150
Atlas_Id 43268
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118971707 and ends at 118981285 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTD-2589C9.4 () / FOXR1 (11q23.3)DDX6 (11q23.3) / FOXR1 (11q23.3)KMT2A (11q23.3) / FOXR1 (11q23.3)
PAFAH1B2 (11q23.3) / FOXR1 (11q23.3)CTD-2589C9.4 FOXR1 11q23.3DDX6 11q23.3 / FOXR1 11q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXR1   29980
Cards
Entrez_Gene (NCBI)FOXR1  283150  forkhead box R1
AliasesDLNB13; FOXN5
GeneCards (Weizmann)FOXR1
Ensembl hg19 (Hinxton)ENSG00000176302 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176302 [Gene_View]  chr11:118971707-118981285 [Contig_View]  FOXR1 [Vega]
ICGC DataPortalENSG00000176302
TCGA cBioPortalFOXR1
AceView (NCBI)FOXR1
Genatlas (Paris)FOXR1
WikiGenes283150
SOURCE (Princeton)FOXR1
Genetics Home Reference (NIH)FOXR1
Genomic and cartography
GoldenPath hg38 (UCSC)FOXR1  -     chr11:118971707-118981285 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXR1  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblFOXR1 - 11q23.3 [CytoView hg19]  FOXR1 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIFOXR1 [Mapview hg19]  FOXR1 [Mapview hg38]
OMIM615755   
Gene and transcription
Genbank (Entrez)AB094092 BC028191 BC038969 BC125040
RefSeq transcript (Entrez)NM_181721
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXR1
Cluster EST : UnigeneHs.116679 [ NCBI ]
CGAP (NCI)Hs.116679
Alternative Splicing GalleryENSG00000176302
Gene ExpressionFOXR1 [ NCBI-GEO ]   FOXR1 [ EBI - ARRAY_EXPRESS ]   FOXR1 [ SEEK ]   FOXR1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283150
GTEX Portal (Tissue expression)FOXR1
Human Protein AtlasENSG00000176302-FOXR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIV2
Splice isoforms : SwissVarQ6PIV2
PhosPhoSitePlusQ6PIV2
Domaine pattern : Prosite (Expaxy)FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXR1
DMDM Disease mutations283150
Blocks (Seattle)FOXR1
SuperfamilyQ6PIV2
Human Protein Atlas [tissue]ENSG00000176302-FOXR1 [tissue]
Peptide AtlasQ6PIV2
HPRD13551
IPIIPI00328795   IPI00889790   IPI00743875   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIV2
IntAct (EBI)Q6PIV2
FunCoupENSG00000176302
BioGRIDFOXR1
STRING (EMBL)FOXR1
ZODIACFOXR1
Ontologies - Pathways
QuickGOQ6PIV2
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  
NDEx NetworkFOXR1
Atlas of Cancer Signalling NetworkFOXR1
Wikipedia pathwaysFOXR1
Orthology - Evolution
OrthoDB283150
GeneTree (enSembl)ENSG00000176302
Phylogenetic Trees/Animal Genes : TreeFamFOXR1
HOVERGENQ6PIV2
HOGENOMQ6PIV2
Homologs : HomoloGeneFOXR1
Homology/Alignments : Family Browser (UCSC)FOXR1
Gene fusions - Rearrangements
Fusion : MitelmanDDX6/FOXR1 [11q23.3/11q23.3]  [t(11;11)(q23;q23)]  
Fusion : MitelmanPAFAH1B2/FOXR1 [11q23.3/11q23.3]  [del(11)(q23)]  [del(11)(q23q23)]  
Fusion: TCGA_MDACCCTD-2589C9.4 FOXR1 11q23.3 BRCA LUAD
Fusion: TCGA_MDACCDDX6 11q23.3 FOXR1 11q23.3 BRCA
Tumor Fusion PortalFOXR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXR1
dbVarFOXR1
ClinVarFOXR1
1000_GenomesFOXR1 
Exome Variant ServerFOXR1
ExAC (Exome Aggregation Consortium)ENSG00000176302
GNOMAD BrowserENSG00000176302
Genetic variants : HAPMAP283150
Genomic Variants (DGV)FOXR1 [DGVbeta]
DECIPHERFOXR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXR1 
Mutations
ICGC Data PortalFOXR1 
TCGA Data PortalFOXR1 
Broad Tumor PortalFOXR1
OASIS PortalFOXR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXR1
DgiDB (Drug Gene Interaction Database)FOXR1
DoCM (Curated mutations)FOXR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXR1 (select a term)
intoGenFOXR1
Cancer3DFOXR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615755   
Orphanet
DisGeNETFOXR1
MedgenFOXR1
Genetic Testing Registry FOXR1
NextProtQ6PIV2 [Medical]
TSGene283150
GENETestsFOXR1
Target ValidationFOXR1
Huge Navigator FOXR1 [HugePedia]
snp3D : Map Gene to Disease283150
BioCentury BCIQFOXR1
ClinGenFOXR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283150
Chemical/Pharm GKB GenePA134959382
Clinical trialFOXR1
Miscellaneous
canSAR (ICR)FOXR1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXR1
EVEXFOXR1
GoPubMedFOXR1
iHOPFOXR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:13:44 CET 2017

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