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FOXR2 (forkhead box R2)

Identity

Alias_symbol (synonym)MGC21658
FOXN6
Other alias
HGNC (Hugo) FOXR2
LocusID (NCBI) 139628
Atlas_Id 46746
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 55623400 and ends at 55626188 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXR2   30469
Cards
Entrez_Gene (NCBI)FOXR2  139628  forkhead box R2
AliasesFOXN6
GeneCards (Weizmann)FOXR2
Ensembl hg19 (Hinxton)ENSG00000189299 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189299 [Gene_View]  ENSG00000189299 [Sequence]  chrX:55623400-55626188 [Contig_View]  FOXR2 [Vega]
ICGC DataPortalENSG00000189299
TCGA cBioPortalFOXR2
AceView (NCBI)FOXR2
Genatlas (Paris)FOXR2
WikiGenes139628
SOURCE (Princeton)FOXR2
Genetics Home Reference (NIH)FOXR2
Genomic and cartography
GoldenPath hg38 (UCSC)FOXR2  -     chrX:55623400-55626188 +  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXR2  -     Xp11.21   [Description]    (hg19-Feb_2009)
EnsemblFOXR2 - Xp11.21 [CytoView hg19]  FOXR2 - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBIFOXR2 [Mapview hg19]  FOXR2 [Mapview hg38]
OMIM300949   
Gene and transcription
Genbank (Entrez)BC012934
RefSeq transcript (Entrez)NM_198451
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXR2
Cluster EST : UnigeneHs.364260 [ NCBI ]
CGAP (NCI)Hs.364260
Alternative Splicing GalleryENSG00000189299
Gene ExpressionFOXR2 [ NCBI-GEO ]   FOXR2 [ EBI - ARRAY_EXPRESS ]   FOXR2 [ SEEK ]   FOXR2 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139628
GTEX Portal (Tissue expression)FOXR2
Human Protein AtlasENSG00000189299-FOXR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PJQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PJQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PJQ5
Splice isoforms : SwissVarQ6PJQ5
PhosPhoSitePlusQ6PJQ5
Domaine pattern : Prosite (Expaxy)FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    WH-like_DNA-bd_sf    WH_DNA-bd_sf   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXR2
DMDM Disease mutations139628
Blocks (Seattle)FOXR2
SuperfamilyQ6PJQ5
Human Protein Atlas [tissue]ENSG00000189299-FOXR2 [tissue]
Peptide AtlasQ6PJQ5
HPRD13552
IPIIPI00394810   
Protein Interaction databases
DIP (DOE-UCLA)Q6PJQ5
IntAct (EBI)Q6PJQ5
FunCoupENSG00000189299
BioGRIDFOXR2
STRING (EMBL)FOXR2
ZODIACFOXR2
Ontologies - Pathways
QuickGOQ6PJQ5
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription by RNA polymerase II  sequence-specific DNA binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription by RNA polymerase II  sequence-specific DNA binding  
NDEx NetworkFOXR2
Atlas of Cancer Signalling NetworkFOXR2
Wikipedia pathwaysFOXR2
Orthology - Evolution
OrthoDB139628
GeneTree (enSembl)ENSG00000189299
Phylogenetic Trees/Animal Genes : TreeFamFOXR2
HOVERGENQ6PJQ5
HOGENOMQ6PJQ5
Homologs : HomoloGeneFOXR2
Homology/Alignments : Family Browser (UCSC)FOXR2
Gene fusions - Rearrangements
Fusion : QuiverFOXR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXR2
dbVarFOXR2
ClinVarFOXR2
1000_GenomesFOXR2 
Exome Variant ServerFOXR2
ExAC (Exome Aggregation Consortium)ENSG00000189299
GNOMAD BrowserENSG00000189299
Varsome BrowserFOXR2
Genetic variants : HAPMAP139628
Genomic Variants (DGV)FOXR2 [DGVbeta]
DECIPHERFOXR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXR2 
Mutations
ICGC Data PortalFOXR2 
TCGA Data PortalFOXR2 
Broad Tumor PortalFOXR2
OASIS PortalFOXR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch FOXR2
DgiDB (Drug Gene Interaction Database)FOXR2
DoCM (Curated mutations)FOXR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXR2 (select a term)
intoGenFOXR2
Cancer3DFOXR2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300949   
Orphanet
DisGeNETFOXR2
MedgenFOXR2
Genetic Testing Registry FOXR2
NextProtQ6PJQ5 [Medical]
TSGene139628
GENETestsFOXR2
Target ValidationFOXR2
Huge Navigator FOXR2 [HugePedia]
snp3D : Map Gene to Disease139628
BioCentury BCIQFOXR2
ClinGenFOXR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139628
Chemical/Pharm GKB GenePA134950741
Clinical trialFOXR2
Miscellaneous
canSAR (ICR)FOXR2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXR2
EVEXFOXR2
GoPubMedFOXR2
iHOPFOXR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:23:37 CEST 2018

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