Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXRED1 (FAD dependent oxidoreductase domain containing 1)

Identity

Alias_symbol (synonym)H17
Other aliasFP634
HGNC (Hugo) FOXRED1
LocusID (NCBI) 55572
Atlas_Id 63575
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 126269040 and ends at 126278132 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HDGF (1q23.1) / FOXRED1 (11q24.2)RNASE1 (14q11.2) / FOXRED1 (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXRED1   26927
Cards
Entrez_Gene (NCBI)FOXRED1  55572  FAD dependent oxidoreductase domain containing 1
AliasesFP634; H17
GeneCards (Weizmann)FOXRED1
Ensembl hg19 (Hinxton)ENSG00000110074 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110074 [Gene_View]  chr11:126269040-126278132 [Contig_View]  FOXRED1 [Vega]
ICGC DataPortalENSG00000110074
TCGA cBioPortalFOXRED1
AceView (NCBI)FOXRED1
Genatlas (Paris)FOXRED1
WikiGenes55572
SOURCE (Princeton)FOXRED1
Genetics Home Reference (NIH)FOXRED1
Genomic and cartography
GoldenPath hg38 (UCSC)FOXRED1  -     chr11:126269040-126278132 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXRED1  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblFOXRED1 - 11q24.2 [CytoView hg19]  FOXRED1 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIFOXRED1 [Mapview hg19]  FOXRED1 [Mapview hg38]
OMIM252010   256000   613622   
Gene and transcription
Genbank (Entrez)AF103801 AF447877 AK023987 AK126067 AK295267
RefSeq transcript (Entrez)NM_017547
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXRED1
Cluster EST : UnigeneHs.317190 [ NCBI ]
CGAP (NCI)Hs.317190
Alternative Splicing GalleryENSG00000110074
Gene ExpressionFOXRED1 [ NCBI-GEO ]   FOXRED1 [ EBI - ARRAY_EXPRESS ]   FOXRED1 [ SEEK ]   FOXRED1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXRED1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55572
GTEX Portal (Tissue expression)FOXRED1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CU9
Splice isoforms : SwissVarQ96CU9
PhosPhoSitePlusQ96CU9
Domains : Interpro (EBI)FAD-dep_OxRdtase    FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)DAO (PF01266)   
Domain families : Pfam (NCBI)pfam01266   
Conserved Domain (NCBI)FOXRED1
DMDM Disease mutations55572
Blocks (Seattle)FOXRED1
SuperfamilyQ96CU9
Human Protein AtlasENSG00000110074
Peptide AtlasQ96CU9
HPRD13620
IPIIPI00549357   IPI00956339   IPI00908741   IPI01018285   IPI00983263   IPI00981511   
Protein Interaction databases
DIP (DOE-UCLA)Q96CU9
IntAct (EBI)Q96CU9
FunCoupENSG00000110074
BioGRIDFOXRED1
STRING (EMBL)FOXRED1
ZODIACFOXRED1
Ontologies - Pathways
QuickGOQ96CU9
Ontology : AmiGOmitochondrion  mitochondrial inner membrane  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  biological_process  integral component of membrane  oxidoreductase activity  mitochondrial respiratory chain complex I assembly  oxidation-reduction process  
Ontology : EGO-EBImitochondrion  mitochondrial inner membrane  mitochondrial respiratory chain complex I  mitochondrial respiratory chain complex I  biological_process  integral component of membrane  oxidoreductase activity  mitochondrial respiratory chain complex I assembly  oxidation-reduction process  
NDEx NetworkFOXRED1
Atlas of Cancer Signalling NetworkFOXRED1
Wikipedia pathwaysFOXRED1
Orthology - Evolution
OrthoDB55572
GeneTree (enSembl)ENSG00000110074
Phylogenetic Trees/Animal Genes : TreeFamFOXRED1
HOVERGENQ96CU9
HOGENOMQ96CU9
Homologs : HomoloGeneFOXRED1
Homology/Alignments : Family Browser (UCSC)FOXRED1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXRED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXRED1
dbVarFOXRED1
ClinVarFOXRED1
1000_GenomesFOXRED1 
Exome Variant ServerFOXRED1
ExAC (Exome Aggregation Consortium)FOXRED1 (select the gene name)
Genetic variants : HAPMAP55572
Genomic Variants (DGV)FOXRED1 [DGVbeta]
DECIPHERFOXRED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXRED1 
Mutations
ICGC Data PortalFOXRED1 
TCGA Data PortalFOXRED1 
Broad Tumor PortalFOXRED1
OASIS PortalFOXRED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXRED1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXRED1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch FOXRED1
DgiDB (Drug Gene Interaction Database)FOXRED1
DoCM (Curated mutations)FOXRED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXRED1 (select a term)
intoGenFOXRED1
Cancer3DFOXRED1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM252010    256000    613622   
Orphanet369    19814   
MedgenFOXRED1
Genetic Testing Registry FOXRED1
NextProtQ96CU9 [Medical]
TSGene55572
GENETestsFOXRED1
Target ValidationFOXRED1
Huge Navigator FOXRED1 [HugePedia]
snp3D : Map Gene to Disease55572
BioCentury BCIQFOXRED1
ClinGenFOXRED1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55572
Chemical/Pharm GKB GenePA143485473
Clinical trialFOXRED1
Miscellaneous
canSAR (ICR)FOXRED1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXRED1
EVEXFOXRED1
GoPubMedFOXRED1
iHOPFOXRED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:49:49 CEST 2017

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