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FOXRED2 (FAD dependent oxidoreductase domain containing 2)

Identity

Alias_namesFAD-dependent oxidoreductase domain containing 2
Alias_symbol (synonym)FLJ23322
ERFAD
Other alias
HGNC (Hugo) FOXRED2
LocusID (NCBI) 80020
Atlas_Id 63576
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 36487186 and ends at 36507101 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FOXRED2 (22q12.3) / EIF3D (22q12.3)FOXRED2 (22q12.3) / MYH9 (22q12.3)FOXRED2 (22q12.3) / TXN2 (22q12.3)
MLST8 (16p13.3) / FOXRED2 (22q12.3)MYH9 (22q12.3) / FOXRED2 (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXRED2   26264
Cards
Entrez_Gene (NCBI)FOXRED2  80020  FAD dependent oxidoreductase domain containing 2
AliasesERFAD
GeneCards (Weizmann)FOXRED2
Ensembl hg19 (Hinxton)ENSG00000100350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100350 [Gene_View]  chr22:36487186-36507101 [Contig_View]  FOXRED2 [Vega]
ICGC DataPortalENSG00000100350
TCGA cBioPortalFOXRED2
AceView (NCBI)FOXRED2
Genatlas (Paris)FOXRED2
WikiGenes80020
SOURCE (Princeton)FOXRED2
Genetics Home Reference (NIH)FOXRED2
Genomic and cartography
GoldenPath hg38 (UCSC)FOXRED2  -     chr22:36487186-36507101 -  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXRED2  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblFOXRED2 - 22q12.3 [CytoView hg19]  FOXRED2 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIFOXRED2 [Mapview hg19]  FOXRED2 [Mapview hg38]
OMIM613777   
Gene and transcription
Genbank (Entrez)AK025714 AK026975 AK091053 AK225347 AK315555
RefSeq transcript (Entrez)NM_001102371 NM_024955
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXRED2
Cluster EST : UnigeneHs.387601 [ NCBI ]
CGAP (NCI)Hs.387601
Alternative Splicing GalleryENSG00000100350
Gene ExpressionFOXRED2 [ NCBI-GEO ]   FOXRED2 [ EBI - ARRAY_EXPRESS ]   FOXRED2 [ SEEK ]   FOXRED2 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXRED2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80020
GTEX Portal (Tissue expression)FOXRED2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWF2
Splice isoforms : SwissVarQ8IWF2
PhosPhoSitePlusQ8IWF2
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)   
Domains : Interpro (EBI)FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FOXRED2
DMDM Disease mutations80020
Blocks (Seattle)FOXRED2
SuperfamilyQ8IWF2
Human Protein AtlasENSG00000100350
Peptide AtlasQ8IWF2
HPRD08666
IPIIPI00647558   IPI00893305   IPI00550059   IPI00879476   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWF2
IntAct (EBI)Q8IWF2
FunCoupENSG00000100350
BioGRIDFOXRED2
STRING (EMBL)FOXRED2
ZODIACFOXRED2
Ontologies - Pathways
QuickGOQ8IWF2
Ontology : AmiGOglycoprotein binding  protein binding  endoplasmic reticulum lumen  oxidoreductase activity  ubiquitin-dependent ERAD pathway  flavin adenine dinucleotide binding  oxidation-reduction process  
Ontology : EGO-EBIglycoprotein binding  protein binding  endoplasmic reticulum lumen  oxidoreductase activity  ubiquitin-dependent ERAD pathway  flavin adenine dinucleotide binding  oxidation-reduction process  
NDEx NetworkFOXRED2
Atlas of Cancer Signalling NetworkFOXRED2
Wikipedia pathwaysFOXRED2
Orthology - Evolution
OrthoDB80020
GeneTree (enSembl)ENSG00000100350
Phylogenetic Trees/Animal Genes : TreeFamFOXRED2
HOVERGENQ8IWF2
HOGENOMQ8IWF2
Homologs : HomoloGeneFOXRED2
Homology/Alignments : Family Browser (UCSC)FOXRED2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXRED2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXRED2
dbVarFOXRED2
ClinVarFOXRED2
1000_GenomesFOXRED2 
Exome Variant ServerFOXRED2
ExAC (Exome Aggregation Consortium)FOXRED2 (select the gene name)
Genetic variants : HAPMAP80020
Genomic Variants (DGV)FOXRED2 [DGVbeta]
DECIPHERFOXRED2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXRED2 
Mutations
ICGC Data PortalFOXRED2 
TCGA Data PortalFOXRED2 
Broad Tumor PortalFOXRED2
OASIS PortalFOXRED2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXRED2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXRED2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXRED2
DgiDB (Drug Gene Interaction Database)FOXRED2
DoCM (Curated mutations)FOXRED2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXRED2 (select a term)
intoGenFOXRED2
Cancer3DFOXRED2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613777   
Orphanet
MedgenFOXRED2
Genetic Testing Registry FOXRED2
NextProtQ8IWF2 [Medical]
TSGene80020
GENETestsFOXRED2
Target ValidationFOXRED2
Huge Navigator FOXRED2 [HugePedia]
snp3D : Map Gene to Disease80020
BioCentury BCIQFOXRED2
ClinGenFOXRED2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80020
Chemical/Pharm GKB GenePA145148808
Clinical trialFOXRED2
Miscellaneous
canSAR (ICR)FOXRED2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXRED2
EVEXFOXRED2
GoPubMedFOXRED2
iHOPFOXRED2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:53 CEST 2017

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