Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FOXS1 (forkhead box S1)

Identity

Alias_namesFKHL18
forkhead (Drosophila)-like 18
forkhead-like 18 (Drosophila)
Alias_symbol (synonym)FREAC10
Other alias
HGNC (Hugo) FOXS1
LocusID (NCBI) 2307
Atlas_Id 51725
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31844300 and ends at 31845617 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FOXS1   3735
Cards
Entrez_Gene (NCBI)FOXS1  2307  forkhead box S1
AliasesFKHL18; FREAC10
GeneCards (Weizmann)FOXS1
Ensembl hg19 (Hinxton)ENSG00000179772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179772 [Gene_View]  chr20:31844300-31845617 [Contig_View]  FOXS1 [Vega]
ICGC DataPortalENSG00000179772
TCGA cBioPortalFOXS1
AceView (NCBI)FOXS1
Genatlas (Paris)FOXS1
WikiGenes2307
SOURCE (Princeton)FOXS1
Genetics Home Reference (NIH)FOXS1
Genomic and cartography
GoldenPath hg38 (UCSC)FOXS1  -     chr20:31844300-31845617 -  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FOXS1  -     20q11.21   [Description]    (hg19-Feb_2009)
EnsemblFOXS1 - 20q11.21 [CytoView hg19]  FOXS1 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIFOXS1 [Mapview hg19]  FOXS1 [Mapview hg38]
OMIM602939   
Gene and transcription
Genbank (Entrez)AF042831 BC013408 BT009768 DQ896105 EU176391
RefSeq transcript (Entrez)NM_004118
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FOXS1
Cluster EST : UnigeneHs.516971 [ NCBI ]
CGAP (NCI)Hs.516971
Alternative Splicing GalleryENSG00000179772
Gene ExpressionFOXS1 [ NCBI-GEO ]   FOXS1 [ EBI - ARRAY_EXPRESS ]   FOXS1 [ SEEK ]   FOXS1 [ MEM ]
Gene Expression Viewer (FireBrowse)FOXS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2307
GTEX Portal (Tissue expression)FOXS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43638   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43638  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43638
Splice isoforms : SwissVarO43638
PhosPhoSitePlusO43638
Domaine pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (EBI)Fork_head_dom    FoxS1    TF_fork_head_CS_1    TF_fork_head_CS_2    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Forkhead (PF00250)   
Domain families : Pfam (NCBI)pfam00250   
Domain families : Smart (EMBL)FH (SM00339)  
Conserved Domain (NCBI)FOXS1
DMDM Disease mutations2307
Blocks (Seattle)FOXS1
SuperfamilyO43638
Human Protein AtlasENSG00000179772
Peptide AtlasO43638
HPRD04246
IPIIPI00220488   
Protein Interaction databases
DIP (DOE-UCLA)O43638
IntAct (EBI)O43638
FunCoupENSG00000179772
BioGRIDFOXS1
STRING (EMBL)FOXS1
ZODIACFOXS1
Ontologies - Pathways
QuickGOO43638
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  blood vessel development  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription, DNA-templated  positive regulation of multicellular organism growth  negative regulation of sequence-specific DNA binding transcription factor activity  negative regulation of transcription, DNA-templated  neuromuscular process controlling balance  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  blood vessel development  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription, DNA-templated  positive regulation of multicellular organism growth  negative regulation of sequence-specific DNA binding transcription factor activity  negative regulation of transcription, DNA-templated  neuromuscular process controlling balance  
NDEx NetworkFOXS1
Atlas of Cancer Signalling NetworkFOXS1
Wikipedia pathwaysFOXS1
Orthology - Evolution
OrthoDB2307
GeneTree (enSembl)ENSG00000179772
Phylogenetic Trees/Animal Genes : TreeFamFOXS1
HOVERGENO43638
HOGENOMO43638
Homologs : HomoloGeneFOXS1
Homology/Alignments : Family Browser (UCSC)FOXS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFOXS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FOXS1
dbVarFOXS1
ClinVarFOXS1
1000_GenomesFOXS1 
Exome Variant ServerFOXS1
ExAC (Exome Aggregation Consortium)FOXS1 (select the gene name)
Genetic variants : HAPMAP2307
Genomic Variants (DGV)FOXS1 [DGVbeta]
DECIPHERFOXS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFOXS1 
Mutations
ICGC Data PortalFOXS1 
TCGA Data PortalFOXS1 
Broad Tumor PortalFOXS1
OASIS PortalFOXS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFOXS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFOXS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FOXS1
DgiDB (Drug Gene Interaction Database)FOXS1
DoCM (Curated mutations)FOXS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FOXS1 (select a term)
intoGenFOXS1
Cancer3DFOXS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602939   
Orphanet
MedgenFOXS1
Genetic Testing Registry FOXS1
NextProtO43638 [Medical]
TSGene2307
GENETestsFOXS1
Target ValidationFOXS1
Huge Navigator FOXS1 [HugePedia]
snp3D : Map Gene to Disease2307
BioCentury BCIQFOXS1
ClinGenFOXS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2307
Chemical/Pharm GKB GenePA162388894
Clinical trialFOXS1
Miscellaneous
canSAR (ICR)FOXS1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFOXS1
EVEXFOXS1
GoPubMedFOXS1
iHOPFOXS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:34:21 CEST 2017

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