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FPGT-TNNI3K (FPGT-TNNI3K readthrough)

Identity

Other alias-
HGNC (Hugo) FPGT-TNNI3K
LocusID (NCBI) 100526835
Atlas_Id 63580
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 74198212 and ends at 74544432 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FPGT-TNNI3K   42952
Cards
Entrez_Gene (NCBI)FPGT-TNNI3K  100526835  FPGT-TNNI3K readthrough
Aliases
GeneCards (Weizmann)FPGT-TNNI3K
Ensembl hg19 (Hinxton)ENSG00000116783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116783 [Gene_View]  chr1:74198212-74544432 [Contig_View]  FPGT-TNNI3K [Vega]
ICGC DataPortalENSG00000116783
TCGA cBioPortalFPGT-TNNI3K
AceView (NCBI)FPGT-TNNI3K
Genatlas (Paris)FPGT-TNNI3K
WikiGenes100526835
SOURCE (Princeton)FPGT-TNNI3K
Genetics Home Reference (NIH)FPGT-TNNI3K
Genomic and cartography
GoldenPath hg38 (UCSC)FPGT-TNNI3K  -     chr1:74198212-74544432 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FPGT-TNNI3K  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblFPGT-TNNI3K - 1p31.1 [CytoView hg19]  FPGT-TNNI3K - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIFPGT-TNNI3K [Mapview hg19]  FPGT-TNNI3K [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB208941 BC032865 BQ447828 BX640903
RefSeq transcript (Entrez)NM_001112808 NM_001199327
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FPGT-TNNI3K
Cluster EST : UnigeneHs.480085 [ NCBI ]
CGAP (NCI)Hs.480085
Alternative Splicing GalleryENSG00000116783
Gene ExpressionFPGT-TNNI3K [ NCBI-GEO ]   FPGT-TNNI3K [ EBI - ARRAY_EXPRESS ]   FPGT-TNNI3K [ SEEK ]   FPGT-TNNI3K [ MEM ]
Gene Expression Viewer (FireBrowse)FPGT-TNNI3K [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100526835
GTEX Portal (Tissue expression)FPGT-TNNI3K
Human Protein AtlasENSG00000116783-FPGT-TNNI3K [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FPGT-TNNI3K
DMDM Disease mutations100526835
Blocks (Seattle)FPGT-TNNI3K
Human Protein Atlas [tissue]ENSG00000116783-FPGT-TNNI3K [tissue]
Protein Interaction databases
FunCoupENSG00000116783
BioGRIDFPGT-TNNI3K
STRING (EMBL)FPGT-TNNI3K
ZODIACFPGT-TNNI3K
Ontologies - Pathways
Huge Navigator FPGT-TNNI3K [HugePedia]
snp3D : Map Gene to Disease100526835
BioCentury BCIQFPGT-TNNI3K
ClinGenFPGT-TNNI3K
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100526835
Clinical trialFPGT-TNNI3K
Miscellaneous
canSAR (ICR)FPGT-TNNI3K (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFPGT-TNNI3K
EVEXFPGT-TNNI3K
GoPubMedFPGT-TNNI3K
iHOPFPGT-TNNI3K
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:48:18 CET 2017

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