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FPGT (fucose-1-phosphate guanylyltransferase)

Identity

Alias_symbol (synonym)GFPP
Other alias
HGNC (Hugo) FPGT
LocusID (NCBI) 8790
Atlas_Id 63579
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 74198212 and ends at 74208702 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FPGT (1p31.1) / TNNI3K (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FPGT   3825
Cards
Entrez_Gene (NCBI)FPGT  8790  fucose-1-phosphate guanylyltransferase
AliasesGFPP
GeneCards (Weizmann)FPGT
Ensembl hg19 (Hinxton)ENSG00000254685 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254685 [Gene_View]  chr1:74198212-74208702 [Contig_View]  FPGT [Vega]
ICGC DataPortalENSG00000254685
TCGA cBioPortalFPGT
AceView (NCBI)FPGT
Genatlas (Paris)FPGT
WikiGenes8790
SOURCE (Princeton)FPGT
Genetics Home Reference (NIH)FPGT
Genomic and cartography
GoldenPath hg38 (UCSC)FPGT  -     chr1:74198212-74208702 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FPGT  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblFPGT - 1p31.1 [CytoView hg19]  FPGT - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIFPGT [Mapview hg19]  FPGT [Mapview hg38]
OMIM603609   
Gene and transcription
Genbank (Entrez)AF017445 AI025848 AK223254 AK294948 AK299468
RefSeq transcript (Entrez)NM_001199328 NM_001199329 NM_003838
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FPGT
Cluster EST : UnigeneHs.480085 [ NCBI ]
CGAP (NCI)Hs.480085
Alternative Splicing GalleryENSG00000254685
Gene ExpressionFPGT [ NCBI-GEO ]   FPGT [ EBI - ARRAY_EXPRESS ]   FPGT [ SEEK ]   FPGT [ MEM ]
Gene Expression Viewer (FireBrowse)FPGT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8790
GTEX Portal (Tissue expression)FPGT
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14772   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14772  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14772
Splice isoforms : SwissVarO14772
Catalytic activity : Enzyme2.7.7.30 [ Enzyme-Expasy ]   2.7.7.302.7.7.30 [ IntEnz-EBI ]   2.7.7.30 [ BRENDA ]   2.7.7.30 [ KEGG ]   
PhosPhoSitePlusO14772
Domains : Interpro (EBI)Fucokinase    Fucose-1-phosphate_GuaTrfase    Nucleotide-diphossugar_trans    Trimer_LpxA-like   
Domain families : Pfam (Sanger)Fucokinase (PF07959)   
Domain families : Pfam (NCBI)pfam07959   
Conserved Domain (NCBI)FPGT
DMDM Disease mutations8790
Blocks (Seattle)FPGT
SuperfamilyO14772
Human Protein AtlasENSG00000254685
Peptide AtlasO14772
HPRD06790
IPIIPI00021943   IPI00816494   IPI00910006   IPI00908519   IPI00977470   
Protein Interaction databases
DIP (DOE-UCLA)O14772
IntAct (EBI)O14772
FunCoupENSG00000254685
BioGRIDFPGT
STRING (EMBL)FPGT
ZODIACFPGT
Ontologies - Pathways
QuickGOO14772
Ontology : AmiGOcatalytic activity  GTP binding  cytoplasm  cytosol  fucose metabolic process  fucose-1-phosphate guanylyltransferase activity  
Ontology : EGO-EBIcatalytic activity  GTP binding  cytoplasm  cytosol  fucose metabolic process  fucose-1-phosphate guanylyltransferase activity  
Pathways : KEGGFructose and mannose metabolism    Amino sugar and nucleotide sugar metabolism   
NDEx NetworkFPGT
Atlas of Cancer Signalling NetworkFPGT
Wikipedia pathwaysFPGT
Orthology - Evolution
OrthoDB8790
GeneTree (enSembl)ENSG00000254685
Phylogenetic Trees/Animal Genes : TreeFamFPGT
HOVERGENO14772
HOGENOMO14772
Homologs : HomoloGeneFPGT
Homology/Alignments : Family Browser (UCSC)FPGT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFPGT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FPGT
dbVarFPGT
ClinVarFPGT
1000_GenomesFPGT 
Exome Variant ServerFPGT
ExAC (Exome Aggregation Consortium)FPGT (select the gene name)
Genetic variants : HAPMAP8790
Genomic Variants (DGV)FPGT [DGVbeta]
DECIPHERFPGT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFPGT 
Mutations
ICGC Data PortalFPGT 
TCGA Data PortalFPGT 
Broad Tumor PortalFPGT
OASIS PortalFPGT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFPGT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFPGT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FPGT
DgiDB (Drug Gene Interaction Database)FPGT
DoCM (Curated mutations)FPGT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FPGT (select a term)
intoGenFPGT
Cancer3DFPGT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603609   
Orphanet
MedgenFPGT
Genetic Testing Registry FPGT
NextProtO14772 [Medical]
TSGene8790
GENETestsFPGT
Target ValidationFPGT
Huge Navigator FPGT [HugePedia]
snp3D : Map Gene to Disease8790
BioCentury BCIQFPGT
ClinGenFPGT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8790
Chemical/Pharm GKB GenePA28243
Clinical trialFPGT
Miscellaneous
canSAR (ICR)FPGT (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFPGT
EVEXFPGT
GoPubMedFPGT
iHOPFPGT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 15:49:50 CEST 2017

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