Atlas of Genetics and Cytogenetics in Oncology and Haematology

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FRA10AC1 (FRA10A associated CGG repeat 1)

Identity

Alias_namesC10orf4
chromosome 10 open reading frame 4
fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1
Other aliasF26C11.1-like
FRA10A
HGNC (Hugo) FRA10AC1
LocusID (NCBI) 118924
Atlas_Id 63582
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 93667883 and ends at 93702572 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		FRA10AC1 (10q23.33) / RNF213 (17q25.3)GADD45A (1p31.3) / FRA10AC1 (10q23.33)GCK (7p13) / FRA10AC1 (10q23.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FRA10AC1   1162
Cards
Entrez_Gene (NCBI)FRA10AC1  118924  FRA10A associated CGG repeat 1
AliasesC10orf4; F26C11.1-like; FRA10A
GeneCards (Weizmann)FRA10AC1
Ensembl hg19 (Hinxton)ENSG00000148690 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148690 [Gene_View]  chr10:93667883-93702572 [Contig_View]  FRA10AC1 [Vega]
ICGC DataPortalENSG00000148690
TCGA cBioPortalFRA10AC1
AceView (NCBI)FRA10AC1
Genatlas (Paris)FRA10AC1
WikiGenes118924
SOURCE (Princeton)FRA10AC1
Genetics Home Reference (NIH)FRA10AC1
Genomic and cartography
GoldenPath hg38 (UCSC)FRA10AC1  -     chr10:93667883-93702572 -  10q23.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRA10AC1  -     10q23.33   [Description]    (hg19-Feb_2009)
EnsemblFRA10AC1 - 10q23.33 [CytoView hg19]  FRA10AC1 - 10q23.33 [CytoView hg38]
Mapping of homologs : NCBIFRA10AC1 [Mapview hg19]  FRA10AC1 [Mapview hg38]
OMIM608866   
Gene and transcription
Genbank (Entrez)AA505135 AJ431721 AJ431722 AJ431723 AJ431724
RefSeq transcript (Entrez)NM_001347712 NM_001347713 NM_001347714 NM_001347715 NM_145246 NM_203438 NM_203439 NM_203440 NM_203441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FRA10AC1
Cluster EST : UnigeneHs.586650 [ NCBI ]
CGAP (NCI)Hs.586650
Alternative Splicing GalleryENSG00000148690
Gene ExpressionFRA10AC1 [ NCBI-GEO ]   FRA10AC1 [ EBI - ARRAY_EXPRESS ]   FRA10AC1 [ SEEK ]   FRA10AC1 [ MEM ]
Gene Expression Viewer (FireBrowse)FRA10AC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118924
GTEX Portal (Tissue expression)FRA10AC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ70Z53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ70Z53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ70Z53
Splice isoforms : SwissVarQ70Z53
PhosPhoSitePlusQ70Z53
Domains : Interpro (EBI)Folate-sensitive_fs_Fra10Ac1   
Domain families : Pfam (Sanger)Fra10Ac1 (PF09725)   
Domain families : Pfam (NCBI)pfam09725   
Conserved Domain (NCBI)FRA10AC1
DMDM Disease mutations118924
Blocks (Seattle)FRA10AC1
SuperfamilyQ70Z53
Human Protein AtlasENSG00000148690
Peptide AtlasQ70Z53
HPRD12319
IPIIPI00429178   IPI00425670   IPI00429177   IPI00425669   IPI00429179   IPI01025565   
Protein Interaction databases
DIP (DOE-UCLA)Q70Z53
IntAct (EBI)Q70Z53
FunCoupENSG00000148690
BioGRIDFRA10AC1
STRING (EMBL)FRA10AC1
ZODIACFRA10AC1
Ontologies - Pathways
QuickGOQ70Z53
Ontology : AmiGOprotein binding  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  
NDEx NetworkFRA10AC1
Atlas of Cancer Signalling NetworkFRA10AC1
Wikipedia pathwaysFRA10AC1
Orthology - Evolution
OrthoDB118924
GeneTree (enSembl)ENSG00000148690
Phylogenetic Trees/Animal Genes : TreeFamFRA10AC1
HOVERGENQ70Z53
HOGENOMQ70Z53
Homologs : HomoloGeneFRA10AC1
Homology/Alignments : Family Browser (UCSC)FRA10AC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRA10AC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRA10AC1
dbVarFRA10AC1
ClinVarFRA10AC1
1000_GenomesFRA10AC1 
Exome Variant ServerFRA10AC1
ExAC (Exome Aggregation Consortium)FRA10AC1 (select the gene name)
Genetic variants : HAPMAP118924
Genomic Variants (DGV)FRA10AC1 [DGVbeta]
DECIPHERFRA10AC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRA10AC1 
Mutations
ICGC Data PortalFRA10AC1 
TCGA Data PortalFRA10AC1 
Broad Tumor PortalFRA10AC1
OASIS PortalFRA10AC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRA10AC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFRA10AC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRA10AC1
DgiDB (Drug Gene Interaction Database)FRA10AC1
DoCM (Curated mutations)FRA10AC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRA10AC1 (select a term)
intoGenFRA10AC1
Cancer3DFRA10AC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608866   
Orphanet
MedgenFRA10AC1
Genetic Testing Registry FRA10AC1
NextProtQ70Z53 [Medical]
TSGene118924
GENETestsFRA10AC1
Target ValidationFRA10AC1
Huge Navigator FRA10AC1 [HugePedia]
snp3D : Map Gene to Disease118924
BioCentury BCIQFRA10AC1
ClinGenFRA10AC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118924
Chemical/Pharm GKB GenePA25476
Clinical trialFRA10AC1
Miscellaneous
canSAR (ICR)FRA10AC1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRA10AC1
EVEXFRA10AC1
GoPubMedFRA10AC1
iHOPFRA10AC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:49:51 CEST 2017
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