Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FREM1 (FRAS1 related extracellular matrix 1)

Identity

Alias (NCBI)BNAR
C9orf143
C9orf145
C9orf154
MOTA
TILRR
TRIGNO2
HGNC (Hugo) FREM1
HGNC Alias symbFLJ25461
C9orf145
C9orf143
DKFZp686M16108
TILRR
HGNC Previous nameC9orf154
HGNC Previous namechromosome 9 open reading frame 154
LocusID (NCBI) 158326
Atlas_Id 63584
Location 9p22.3  [Link to chromosome band 9p22]
Location_base_pair Starts at 14734666 and ends at 14910995 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FREM1 (9p22.3) / FREM1 (9p22.3)NFIB (9p23) / FREM1 (9p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)FREM1   23399
Cards
Entrez_Gene (NCBI)FREM1    FRAS1 related extracellular matrix 1
AliasesBNAR; C9orf143; C9orf145; C9orf154; 
MOTA; TILRR; TRIGNO2
GeneCards (Weizmann)FREM1
Ensembl hg19 (Hinxton)ENSG00000164946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164946 [Gene_View]  ENSG00000164946 [Sequence]  chr9:14734666-14910995 [Contig_View]  FREM1 [Vega]
ICGC DataPortalENSG00000164946
TCGA cBioPortalFREM1
AceView (NCBI)FREM1
Genatlas (Paris)FREM1
SOURCE (Princeton)FREM1
Genetics Home Reference (NIH)FREM1
Genomic and cartography
GoldenPath hg38 (UCSC)FREM1  -     chr9:14734666-14910995 -  9p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FREM1  -     9p22.3   [Description]    (hg19-Feb_2009)
GoldenPathFREM1 - 9p22.3 [CytoView hg19]  FREM1 - 9p22.3 [CytoView hg38]
ImmunoBaseENSG00000164946
Genome Data Viewer NCBIFREM1 [Mapview hg19]  
OMIM248450   608944   608980   614485   
Gene and transcription
Genbank (Entrez)AB160987 AK054690 AK058190 BC031064 BU677942
RefSeq transcript (Entrez)NM_001177704 NM_001370058 NM_001370060 NM_001370061 NM_001370063 NM_001370065 NM_001379081 NM_144966
Consensus coding sequences : CCDS (NCBI)FREM1
Gene ExpressionFREM1 [ NCBI-GEO ]   FREM1 [ EBI - ARRAY_EXPRESS ]   FREM1 [ SEEK ]   FREM1 [ MEM ]
Gene Expression Viewer (FireBrowse)FREM1 [ Firebrowse - Broad ]
GenevisibleExpression of FREM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158326
GTEX Portal (Tissue expression)FREM1
Human Protein AtlasENSG00000164946-FREM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H8C1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H8C1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H8C1
PhosPhoSitePlusQ5H8C1
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)    CSPG (PS51854)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link_sf    CalX-like_sf    Calx_beta    CSPG_rpt    CTDL_fold    FREM1   
Domain families : Pfam (Sanger)Calx-beta (PF03160)    Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam03160    pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)FREM1
SuperfamilyQ5H8C1
AlphaFold pdb e-kbQ5H8C1   
Human Protein Atlas [tissue]ENSG00000164946-FREM1 [tissue]
HPRD09865
Protein Interaction databases
DIP (DOE-UCLA)Q5H8C1
IntAct (EBI)Q5H8C1
BioGRIDFREM1
STRING (EMBL)FREM1
ZODIACFREM1
Ontologies - Pathways
QuickGOQ5H8C1
Ontology : AmiGOprotein binding  extracellular region  basement membrane  cell communication  cell-matrix adhesion  integral component of membrane  carbohydrate binding  metal ion binding  craniofacial suture morphogenesis  
Ontology : EGO-EBIprotein binding  extracellular region  basement membrane  cell communication  cell-matrix adhesion  integral component of membrane  carbohydrate binding  metal ion binding  craniofacial suture morphogenesis  
NDEx NetworkFREM1
Atlas of Cancer Signalling NetworkFREM1
Wikipedia pathwaysFREM1
Orthology - Evolution
OrthoDB158326
GeneTree (enSembl)ENSG00000164946
Phylogenetic Trees/Animal Genes : TreeFamFREM1
Homologs : HomoloGeneFREM1
Homology/Alignments : Family Browser (UCSC)FREM1
Gene fusions - Rearrangements
Fusion : QuiverFREM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFREM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FREM1
dbVarFREM1
ClinVarFREM1
MonarchFREM1
1000_GenomesFREM1 
Exome Variant ServerFREM1
GNOMAD BrowserENSG00000164946
Varsome BrowserFREM1
ACMGFREM1 variants
VarityQ5H8C1
Genomic Variants (DGV)FREM1 [DGVbeta]
DECIPHERFREM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFREM1 
Mutations
ICGC Data PortalFREM1 
TCGA Data PortalFREM1 
Broad Tumor PortalFREM1
OASIS PortalFREM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFREM1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFREM1
Mutations and Diseases : HGMDFREM1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaFREM1
DgiDB (Drug Gene Interaction Database)FREM1
DoCM (Curated mutations)FREM1
CIViC (Clinical Interpretations of Variants in Cancer)FREM1
Cancer3DFREM1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM248450    608944    608980    614485   
Orphanet2478    2983    18829    12163   
DisGeNETFREM1
MedgenFREM1
Genetic Testing Registry FREM1
NextProtQ5H8C1 [Medical]
GENETestsFREM1
Target ValidationFREM1
Huge Navigator FREM1 [HugePedia]
ClinGenFREM1
Clinical trials, drugs, therapy
MyCancerGenomeFREM1
Protein Interactions : CTDFREM1
Pharm GKB GenePA134892147
PharosQ5H8C1
Clinical trialFREM1
Miscellaneous
canSAR (ICR)FREM1
HarmonizomeFREM1
DataMed IndexFREM1
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXFREM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:50:50 CEST 2021

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