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FREM3 (FRAS1 related extracellular matrix 3)

Identity

Other alias-
HGNC (Hugo) FREM3
LocusID (NCBI) 166752
Atlas_Id 63585
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 143577408 and ends at 143700675 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FREM3   25172
Cards
Entrez_Gene (NCBI)FREM3  166752  FRAS1 related extracellular matrix 3
Aliases
GeneCards (Weizmann)FREM3
Ensembl hg19 (Hinxton)ENSG00000183090 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183090 [Gene_View]  chr4:143577408-143700675 [Contig_View]  FREM3 [Vega]
ICGC DataPortalENSG00000183090
TCGA cBioPortalFREM3
AceView (NCBI)FREM3
Genatlas (Paris)FREM3
WikiGenes166752
SOURCE (Princeton)FREM3
Genetics Home Reference (NIH)FREM3
Genomic and cartography
GoldenPath hg38 (UCSC)FREM3  -     chr4:143577408-143700675 -  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FREM3  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblFREM3 - 4q31.21 [CytoView hg19]  FREM3 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIFREM3 [Mapview hg19]  FREM3 [Mapview hg38]
OMIM608946   
Gene and transcription
Genbank (Entrez)AI184955 AW953229 BE223071 DN831271 DR007885
RefSeq transcript (Entrez)NM_001168235
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FREM3
Cluster EST : UnigeneHs.252714 [ NCBI ]
CGAP (NCI)Hs.252714
Alternative Splicing GalleryENSG00000183090
Gene ExpressionFREM3 [ NCBI-GEO ]   FREM3 [ EBI - ARRAY_EXPRESS ]   FREM3 [ SEEK ]   FREM3 [ MEM ]
Gene Expression Viewer (FireBrowse)FREM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)166752
GTEX Portal (Tissue expression)FREM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C091   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C091  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C091
Splice isoforms : SwissVarP0C091
PhosPhoSitePlusP0C091
Domains : Interpro (EBI)Calx_beta    FREM3   
Domain families : Pfam (Sanger)Calx-beta (PF03160)   
Domain families : Pfam (NCBI)pfam03160   
Domain families : Smart (EMBL)Calx_beta (SM00237)  
Conserved Domain (NCBI)FREM3
DMDM Disease mutations166752
Blocks (Seattle)FREM3
SuperfamilyP0C091
Human Protein AtlasENSG00000183090
Peptide AtlasP0C091
IPIIPI00095592   
Protein Interaction databases
DIP (DOE-UCLA)P0C091
IntAct (EBI)P0C091
FunCoupENSG00000183090
BioGRIDFREM3
STRING (EMBL)FREM3
ZODIACFREM3
Ontologies - Pathways
QuickGOP0C091
Ontology : AmiGObasement membrane  extracellular space  cell communication  cell adhesion  integral component of membrane  extracellular matrix  metal ion binding  
Ontology : EGO-EBIbasement membrane  extracellular space  cell communication  cell adhesion  integral component of membrane  extracellular matrix  metal ion binding  
NDEx NetworkFREM3
Atlas of Cancer Signalling NetworkFREM3
Wikipedia pathwaysFREM3
Orthology - Evolution
OrthoDB166752
GeneTree (enSembl)ENSG00000183090
Phylogenetic Trees/Animal Genes : TreeFamFREM3
HOVERGENP0C091
HOGENOMP0C091
Homologs : HomoloGeneFREM3
Homology/Alignments : Family Browser (UCSC)FREM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFREM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FREM3
dbVarFREM3
ClinVarFREM3
1000_GenomesFREM3 
Exome Variant ServerFREM3
ExAC (Exome Aggregation Consortium)FREM3 (select the gene name)
Genetic variants : HAPMAP166752
Genomic Variants (DGV)FREM3 [DGVbeta]
DECIPHERFREM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFREM3 
Mutations
ICGC Data PortalFREM3 
TCGA Data PortalFREM3 
Broad Tumor PortalFREM3
OASIS PortalFREM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFREM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFREM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FREM3
DgiDB (Drug Gene Interaction Database)FREM3
DoCM (Curated mutations)FREM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FREM3 (select a term)
intoGenFREM3
Cancer3DFREM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608946   
Orphanet
MedgenFREM3
Genetic Testing Registry FREM3
NextProtP0C091 [Medical]
TSGene166752
GENETestsFREM3
Target ValidationFREM3
Huge Navigator FREM3 [HugePedia]
snp3D : Map Gene to Disease166752
BioCentury BCIQFREM3
ClinGenFREM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD166752
Chemical/Pharm GKB GenePA134941914
Clinical trialFREM3
Miscellaneous
canSAR (ICR)FREM3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFREM3
EVEXFREM3
GoPubMedFREM3
iHOPFREM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:08:54 CEST 2017

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