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FRG1B (FSHD region gene 1 family, member B)

Identity

Other aliasC20orf80
bA348I14.2
HGNC (Hugo) FRG1B
LocusID (NCBI) 284802
Atlas_Id 63586
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 29611879 and ends at 29634007 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRG1B   15792
Cards
Entrez_Gene (NCBI)FRG1B  284802  FSHD region gene 1 family, member B
AliasesC20orf80; bA348I14.2
GeneCards (Weizmann)FRG1B
Ensembl hg19 (Hinxton)ENSG00000149531 [Gene_View]  chr20:29611879-29634007 [Contig_View]  FRG1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000149531 [Gene_View]  chr20:29611879-29634007 [Contig_View]  FRG1B [Vega]
ICGC DataPortalENSG00000149531
TCGA cBioPortalFRG1B
AceView (NCBI)FRG1B
Genatlas (Paris)FRG1B
WikiGenes284802
SOURCE (Princeton)FRG1B
Genetics Home Reference (NIH)FRG1B
Genomic and cartography
GoldenPath hg19 (UCSC)FRG1B  -     chr20:29611879-29634007 +  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FRG1B  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblFRG1B - 20q11.21 [CytoView hg19]  FRG1B - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIFRG1B [Mapview hg19]  FRG1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC062724 BC062743 BC095491
RefSeq transcript (Entrez)NM_207350
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_025215 NW_004929417
Consensus coding sequences : CCDS (NCBI)FRG1B
Cluster EST : UnigeneHs.653099 [ NCBI ]
CGAP (NCI)Hs.653099
Alternative Splicing GalleryENSG00000149531
Gene ExpressionFRG1B [ NCBI-GEO ]   FRG1B [ EBI - ARRAY_EXPRESS ]   FRG1B [ SEEK ]   FRG1B [ MEM ]
Gene Expression Viewer (FireBrowse)FRG1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284802
GTEX Portal (Tissue expression)FRG1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZ01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZ01
Splice isoforms : SwissVarQ9BZ01
PhosPhoSitePlusQ9BZ01
Domains : Interpro (EBI)Actin_cross-linking    FRG1   
Domain families : Pfam (Sanger)FRG1 (PF06229)   
Domain families : Pfam (NCBI)pfam06229   
Conserved Domain (NCBI)FRG1B
DMDM Disease mutations284802
Blocks (Seattle)FRG1B
SuperfamilyQ9BZ01
Human Protein AtlasENSG00000149531
Peptide AtlasQ9BZ01
HPRD17570
IPIIPI00001076   IPI00982944   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ01
IntAct (EBI)Q9BZ01
FunCoupENSG00000149531
BioGRIDFRG1B
STRING (EMBL)FRG1B
ZODIACFRG1B
Ontologies - Pathways
QuickGOQ9BZ01
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFRG1B
Atlas of Cancer Signalling NetworkFRG1B
Wikipedia pathwaysFRG1B
Orthology - Evolution
OrthoDB284802
GeneTree (enSembl)ENSG00000149531
Phylogenetic Trees/Animal Genes : TreeFamFRG1B
HOVERGENQ9BZ01
HOGENOMQ9BZ01
Homologs : HomoloGeneFRG1B
Homology/Alignments : Family Browser (UCSC)FRG1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRG1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRG1B
dbVarFRG1B
ClinVarFRG1B
1000_GenomesFRG1B 
Exome Variant ServerFRG1B
ExAC (Exome Aggregation Consortium)FRG1B (select the gene name)
Genetic variants : HAPMAP284802
Genomic Variants (DGV)FRG1B [DGVbeta]
DECIPHER (Syndromes)20:29611879-29634007  ENSG00000149531
CONAN: Copy Number AnalysisFRG1B 
Mutations
ICGC Data PortalFRG1B 
TCGA Data PortalFRG1B 
Broad Tumor PortalFRG1B
OASIS PortalFRG1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRG1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFRG1B
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch FRG1B
DgiDB (Drug Gene Interaction Database)FRG1B
DoCM (Curated mutations)FRG1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRG1B (select a term)
intoGenFRG1B
Cancer3DFRG1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFRG1B
Genetic Testing Registry FRG1B
NextProtQ9BZ01 [Medical]
TSGene284802
GENETestsFRG1B
Huge Navigator FRG1B [HugePedia]
snp3D : Map Gene to Disease284802
BioCentury BCIQFRG1B
ClinGenFRG1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284802
Clinical trialFRG1B
Miscellaneous
canSAR (ICR)FRG1B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRG1B
EVEXFRG1B
GoPubMedFRG1B
iHOPFRG1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:05:23 CET 2017

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