Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

FRG1BP (FSHD region gene 1 family member B, pseudogene)

Identity

Alias_namesC20orf80
FRG1B
chromosome 20 open reading frame 80
FSHD region gene 1 family, member B
Alias_symbol (synonym)bA348I14.2
Other alias
HGNC (Hugo) FRG1BP
LocusID (NCBI) 284802
Atlas_Id 78052
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 29611879 and ends at 29634007 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FRG1BP (20q11.21) / LOC100132352 ()
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)FRG1BP   15792
Cards
Entrez_Gene (NCBI)FRG1BP  284802  FSHD region gene 1 family member B, pseudogene
AliasesC20orf80; FRG1B; bA348I14.2
GeneCards (Weizmann)FRG1BP
Ensembl hg19 (Hinxton) [Gene_View]  chr20:29611879-29634007 [Contig_View]  FRG1BP [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:29611879-29634007 [Contig_View]  FRG1BP [Vega]
TCGA cBioPortalFRG1BP
AceView (NCBI)FRG1BP
Genatlas (Paris)FRG1BP
WikiGenes284802
SOURCE (Princeton)FRG1BP
Genetics Home Reference (NIH)FRG1BP
Genomic and cartography
GoldenPath hg19 (UCSC)FRG1BP  -     chr20:29611879-29634007 +  20q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FRG1BP  -     20q11.21   [Description]    (hg38-Dec_2013)
EnsemblFRG1BP - 20q11.21 [CytoView hg19]  FRG1BP - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIFRG1BP [Mapview hg19]  FRG1BP [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC062724 BC062743 BC095491
RefSeq transcript (Entrez)NM_207350
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_025215 NW_004929417
Consensus coding sequences : CCDS (NCBI)FRG1BP
Cluster EST : UnigeneHs.653099 [ NCBI ]
CGAP (NCI)Hs.653099
Gene ExpressionFRG1BP [ NCBI-GEO ]   FRG1BP [ EBI - ARRAY_EXPRESS ]   FRG1BP [ SEEK ]   FRG1BP [ MEM ]
Gene Expression Viewer (FireBrowse)FRG1BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284802
GTEX Portal (Tissue expression)FRG1BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZ01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZ01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZ01
Splice isoforms : SwissVarQ9BZ01
PhosPhoSitePlusQ9BZ01
Domains : Interpro (EBI)Actin_cross-linking    FRG1   
Domain families : Pfam (Sanger)FRG1 (PF06229)   
Domain families : Pfam (NCBI)pfam06229   
Conserved Domain (NCBI)FRG1BP
DMDM Disease mutations284802
Blocks (Seattle)FRG1BP
SuperfamilyQ9BZ01
Peptide AtlasQ9BZ01
HPRD17570
IPIIPI00001076   IPI00982944   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZ01
IntAct (EBI)Q9BZ01
BioGRIDFRG1BP
STRING (EMBL)FRG1BP
ZODIACFRG1BP
Ontologies - Pathways
QuickGOQ9BZ01
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFRG1BP
Atlas of Cancer Signalling NetworkFRG1BP
Wikipedia pathwaysFRG1BP
Orthology - Evolution
OrthoDB284802
Phylogenetic Trees/Animal Genes : TreeFamFRG1BP
HOVERGENQ9BZ01
HOGENOMQ9BZ01
Homologs : HomoloGeneFRG1BP
Homology/Alignments : Family Browser (UCSC)FRG1BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRG1BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRG1BP
dbVarFRG1BP
ClinVarFRG1BP
1000_GenomesFRG1BP 
Exome Variant ServerFRG1BP
ExAC (Exome Aggregation Consortium)FRG1BP (select the gene name)
Genetic variants : HAPMAP284802
Genomic Variants (DGV)FRG1BP [DGVbeta]
DECIPHER (Syndromes)20:29611879-29634007  
CONAN: Copy Number AnalysisFRG1BP 
Mutations
ICGC Data PortalFRG1BP 
TCGA Data PortalFRG1BP 
Broad Tumor PortalFRG1BP
OASIS PortalFRG1BP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFRG1BP
BioMutasearch FRG1BP
DgiDB (Drug Gene Interaction Database)FRG1BP
DoCM (Curated mutations)FRG1BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRG1BP (select a term)
intoGenFRG1BP
Cancer3DFRG1BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenFRG1BP
Genetic Testing Registry FRG1BP
NextProtQ9BZ01 [Medical]
TSGene284802
GENETestsFRG1BP
Huge Navigator FRG1BP [HugePedia]
snp3D : Map Gene to Disease284802
BioCentury BCIQFRG1BP
ClinGenFRG1BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284802
Clinical trialFRG1BP
Miscellaneous
canSAR (ICR)FRG1BP (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRG1BP
EVEXFRG1BP
GoPubMedFRG1BP
iHOPFRG1BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:05:24 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.