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FRG2 (FSHD region gene 2)

Identity

Alias_symbol (synonym)FRG2A
Other alias
HGNC (Hugo) FRG2
LocusID (NCBI) 448831
Atlas_Id 63587
Location 4q35.2  [Link to chromosome band 4q35]
Location_base_pair Starts at 190024368 and ends at 190027257 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FRG2   19136
Cards
Entrez_Gene (NCBI)FRG2  448831  FSHD region gene 2
AliasesFRG2A
GeneCards (Weizmann)FRG2
Ensembl hg19 (Hinxton)ENSG00000205097 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205097 [Gene_View]  chr4:190024368-190027257 [Contig_View]  FRG2 [Vega]
ICGC DataPortalENSG00000205097
TCGA cBioPortalFRG2
AceView (NCBI)FRG2
Genatlas (Paris)FRG2
WikiGenes448831
SOURCE (Princeton)FRG2
Genetics Home Reference (NIH)FRG2
Genomic and cartography
GoldenPath hg38 (UCSC)FRG2  -     chr4:190024368-190027257 -  4q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FRG2  -     4q35.2   [Description]    (hg19-Feb_2009)
EnsemblFRG2 - 4q35.2 [CytoView hg19]  FRG2 - 4q35.2 [CytoView hg38]
Mapping of homologs : NCBIFRG2 [Mapview hg19]  FRG2 [Mapview hg38]
OMIM609032   
Gene and transcription
Genbank (Entrez)AY714545 BC144572
RefSeq transcript (Entrez)NM_001005217 NM_001286820
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_187650 NW_015495300 NW_015495301
Consensus coding sequences : CCDS (NCBI)FRG2
Cluster EST : UnigeneHs.626907 [ NCBI ]
CGAP (NCI)Hs.626907
Alternative Splicing GalleryENSG00000205097
Gene ExpressionFRG2 [ NCBI-GEO ]   FRG2 [ EBI - ARRAY_EXPRESS ]   FRG2 [ SEEK ]   FRG2 [ MEM ]
Gene Expression Viewer (FireBrowse)FRG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)448831
GTEX Portal (Tissue expression)FRG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ64ET8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ64ET8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ64ET8
Splice isoforms : SwissVarQ64ET8
PhosPhoSitePlusQ64ET8
Domains : Interpro (EBI)FRG2   
Domain families : Pfam (Sanger)FRG2 (PF15315)   
Domain families : Pfam (NCBI)pfam15315   
Conserved Domain (NCBI)FRG2
DMDM Disease mutations448831
Blocks (Seattle)FRG2
SuperfamilyQ64ET8
Human Protein AtlasENSG00000205097
Peptide AtlasQ64ET8
HPRD16418
IPIIPI00737958   
Protein Interaction databases
DIP (DOE-UCLA)Q64ET8
IntAct (EBI)Q64ET8
FunCoupENSG00000205097
BioGRIDFRG2
STRING (EMBL)FRG2
ZODIACFRG2
Ontologies - Pathways
QuickGOQ64ET8
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkFRG2
Atlas of Cancer Signalling NetworkFRG2
Wikipedia pathwaysFRG2
Orthology - Evolution
OrthoDB448831
GeneTree (enSembl)ENSG00000205097
Phylogenetic Trees/Animal Genes : TreeFamFRG2
HOVERGENQ64ET8
HOGENOMQ64ET8
Homologs : HomoloGeneFRG2
Homology/Alignments : Family Browser (UCSC)FRG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFRG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FRG2
dbVarFRG2
ClinVarFRG2
1000_GenomesFRG2 
Exome Variant ServerFRG2
ExAC (Exome Aggregation Consortium)FRG2 (select the gene name)
Genetic variants : HAPMAP448831
Genomic Variants (DGV)FRG2 [DGVbeta]
DECIPHERFRG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFRG2 
Mutations
ICGC Data PortalFRG2 
TCGA Data PortalFRG2 
Broad Tumor PortalFRG2
OASIS PortalFRG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFRG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFRG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FRG2
DgiDB (Drug Gene Interaction Database)FRG2
DoCM (Curated mutations)FRG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FRG2 (select a term)
intoGenFRG2
Cancer3DFRG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609032   
Orphanet
MedgenFRG2
Genetic Testing Registry FRG2
NextProtQ64ET8 [Medical]
TSGene448831
GENETestsFRG2
Target ValidationFRG2
Huge Navigator FRG2 [HugePedia]
snp3D : Map Gene to Disease448831
BioCentury BCIQFRG2
ClinGenFRG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD448831
Chemical/Pharm GKB GenePA162388919
Clinical trialFRG2
Miscellaneous
canSAR (ICR)FRG2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFRG2
EVEXFRG2
GoPubMedFRG2
iHOPFRG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:49:53 CEST 2017

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